Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0582 ATGGAAATTGTAACTTTTGGCCATGACAGTCGAAGAGAGGTTAAAATGATGCATCATAATCCAAATTCATTCACTATCAAAACTAGTTGGCCCTTGGCTGAATCTGTTGCGGACAAAATCCACTCTTTGGCCATGTTTCATGTTTCTCACAAGACATGTTTTGGTTCCTTACCATTGCTCCTCCCTAGGCTCAAACCTTTCTCCCCTGTTCTGCGTGTCATTGGAGTTCGTAGCATTGTTGTAATGCCTGTAAATCCATGGACCCCCTTCTTCCTCTGCTTTTCTCTTTCACTTCTTCGTCATTCTTTTATAGCTTTTGCAGTAAACTCGCAAGGAGAAGCTCTTCTTTCATGGAAGAGAACCCTCAAGGGATCACTGGAGGTGTTGAGCGATTGGAATCCAAATGACAATACACCATGCCGCTGGTTTGGAGTTAACTGTAACTCCAACTACGAGGTTGTGAAATTAGATCTGAGGTATGTGGGTTTGGTTGGGACACTTCCTTCTAATTTCACCTCATTGAGTCTTTCCCTGAACGAGCTAGTCCTTACTGGAACTAACCTCACTGGTTCAATTCCGAAAGAAATAGGCACTCTTGGCGTGCTCCACTACTTGGACTTGAGTGACAATGCACTGACAGGTGAAATCCCAAGTGAACTTTTCTTCTTGACAAAGCTTGAGCAACTCCATCTGAACTCAAACCAGCTTGCGGGTTCGATTTCGAAGGCTATAGGGAACCTCACAGAGTTGACATCGTTGGTTTTATATGACAATCAACTTGGTGGTGAAATTCCCAGAACCATTGGTAACTTGAGGAAGCTGCAAATGATCAGAGCTGGAGGAAACAAGAACCTTCAAGGCTTCTTGCCACAAGAAATTGGCAACTGTACCAATTTGGTCGTGTTGGGTTTGGCTGAAACTAGTATTTCTGGTTCTCTTCCTCCAACTCTTGGCCTTCTTAAGAAGCTTGACACTCTTGCAATTTACACTTCACTTCTATCTGGCCAAATTCCTCCCGAACTTGGGTATTGTGATGAGCTTCAGAACATTTATCTGTACGAGAATTCCATCTCAGGATCCATACCAAGTAGACTGGGAAATCTTAGAAACCTTAAAAATCTTCTATTATGGCAGAACAATTTAGTTGGCACCATCCCGCCGGAGCTTGGAAATTGCCACCAGTTATCCGTCATTGACATTTCGATGAACTCGCTTGTCGGAAGCATTCCCAAAAGTTTTGGAAATTTGACGTTGCTAGAGGAGTTTCAACTCAGTGTCAATCAGATTTCGGGTCAGATTCCAACAGAATTGGGAAACTGTCACTCACTCACTCACGTTGAGCTGGACAACAATCTAATCAGAGGTACAATACCTTCTGAATTTGGGAACCTCGGGAATCTAACTTTGCTGTTCTTGTGGCATAACAAGCTCGAAGGAACCATACCATCTTCGCTTTCGAGTTGTCAAAATCTGGAAGCAGTGGATCTGTCACAGAATGGATTAACGGGTTCCATTCCGAAGGGGATATTCCTGCTCAAGAATCTGAACAAGCTTTTGCTACTCTCCAACAATCTCTCTGGGGATATACCCACTGAGATTGGGAACTGTACGTCTCTGATTCGGTTCCGAGCCAGCAACAATAAAATCACGGGGAACATTCCACCAAATATTGGAAATCTGAAGAATTTGAATTTCTTGGATCTTGCAAGCAATCGTGTTTCAGGAGTTATTCCAGAAGAGCTCTCAGGCAGTCGAAATCTCGCATTTCTGGACCTCCACTCAAATTTGATATCAGGAAGCTTGCCCGAAAGTCTCAGCCTGCTAGTCTCGCTCCAATTTATTGATGTCTCCGATAACATGATTGAAGGTAGACTAAGCCCAAGCCTCGGAAAGCTTGGCGCACTCACCAAACTCATTCTCAGAAAAAATCATCTCTCTGGATCCATTCCGAGTGAATTTGGTTTTTGTGCGAAGCTGCAATTATTGGACCTCAGTAGCAATGAACTCTCAGGCAAAATCCCAGGTAGTCTGGGTAACATTCCGGCGCTGGAAATCGCGATGAACCTAAGCTGGAATCAGCTCTATGGCGAGATTCCTATGGAGTTTTCTGCATTGAGCAAACTTGGAGTTTTGGACATATCGCACAACGAGCTCACCGGTAACCTACAGTATCTTGAGGACCTCCAAAATCTCGTGGTCCTTAACATCTCATACAACAATCTCTCGGGTCGCATGCCAGACAAGCCTTTCTTCTCGAAGCTTCCTCTCAGCGTCCTCGAAGGGAACCCGTCGCTCTGCTTCCCCGGCAACCGATGTCCCGGAGACATTTCCAAACGGTCGATTCGGCGGACAAAGGCAGCGCGTATAGCCATGGTGGTCCTCCTGTGTATCGCGTGTTTGCTTTTCCTCACGGCCCTGTACGTCTTCGTTGCAGCAAAAAGAAGGTGGCTTACGGAGGGCGATCTGGACCTCAACGGTGGGGATAGCGACGTGGAGATGGGCCCACCTTGGGAGGTTACACTTTATCAGAAGCTAGACTTGTCAATCTATGACGTGGCGAGATGCCTCACAGTTGGCAACGTAATTGGGCGCGGACGATCAGGCGTAGTTTATAGAGTGGATCTCCCCTCAGGATTAACGATCGCCGTGAAAAGGTACAGATTATCGGAGAAATTTTCAGCCTCTTCTTTCTCCTCGGAGATTGCCACGCTAGCTAGAATCCGGCACCGGAATATTGTACGGCTATTAGGTTGGGCGGCGAATCGGAAAACGAAATTACTGTTGTATGATTATTTACCTAACGGTAATCTAGATACGCTCCTGCACGAGGGTTGCAGAGGATTCATTGAGTGGGAGACGCGGTTCAAGATAGCGTTGGGCGTGGCGGAAGGCTTGGCCTATCTACACCATGACTGCGTACCAGCTATCTTGCACCGGGACGTCAAGGCGCACAACATTTTGCTAGGAGACACACACGAACCATGTTTGGCAGATTTTGGATTTGCAAGATTGGTGGACGACGATCACAGTCCGTTTTCCGTTAATCCACAGTTCGCGGGTTCTTACGGTTACATTGCGCCAGAATATGGGTGCATGATGAGGATAAGAGAGAAGAGCGACGTGTACAGCTACGGAGTAGTACTGTTAGAGATAATAACTGGGAAAAGACCCATAATAGAGGCATGCACGGCGGAGGAGGAGGAGGAGGGACAGCACTTGATCGGGTGGGTGAGACAGAAGCTGAAGAGCAAGAGGGACCCAACAGAGATTGTAGATTCTAAGCTTCATGGACTTCCACACACACAAGTCCAAGAGATGCTTCAGGCTCTTGGCATTGCTCTTCTTTGCACCAGTCAACGTCCCGATGATCGCCCCACCATGAAGGATGTCGCCGCATTATTGAGAGAGATTCGACCCGACCCGTCTCTTTCATCTGATCTGCCCCACAAGCCACCCGTCCCCACCGCATCCTCCGCCTCTAATGTTCATGGCCTTTCTTCCCCGAAAACGACGCCTCATCCTTCGTCGTTTGCCTTATCCTCCGACTTGTCCCTCCTCCAGTCTTCTTCTCATAATTCTCTTGCCCTTTACCACTTACCACCCACCTAG 3609 0.4702 MEIVTFGHDSRREVKMMHHNPNSFTIKTSWPLAESVADKIHSLAMFHVSHKTCFGSLPLLLPRLKPFSPVLRVIGVRSIVVMPVNPWTPFFLCFSLSLLRHSFIAFAVNSQGEALLSWKRTLKGSLEVLSDWNPNDNTPCRWFGVNCNSNYEVVKLDLRYVGLVGTLPSNFTSLSLSLNELVLTGTNLTGSIPKEIGTLGVLHYLDLSDNALTGEIPSELFFLTKLEQLHLNSNQLAGSISKAIGNLTELTSLVLYDNQLGGEIPRTIGNLRKLQMIRAGGNKNLQGFLPQEIGNCTNLVVLGLAETSISGSLPPTLGLLKKLDTLAIYTSLLSGQIPPELGYCDELQNIYLYENSISGSIPSRLGNLRNLKNLLLWQNNLVGTIPPELGNCHQLSVIDISMNSLVGSIPKSFGNLTLLEEFQLSVNQISGQIPTELGNCHSLTHVELDNNLIRGTIPSEFGNLGNLTLLFLWHNKLEGTIPSSLSSCQNLEAVDLSQNGLTGSIPKGIFLLKNLNKLLLLSNNLSGDIPTEIGNCTSLIRFRASNNKITGNIPPNIGNLKNLNFLDLASNRVSGVIPEELSGSRNLAFLDLHSNLISGSLPESLSLLVSLQFIDVSDNMIEGRLSPSLGKLGALTKLILRKNHLSGSIPSEFGFCAKLQLLDLSSNELSGKIPGSLGNIPALEIAMNLSWNQLYGEIPMEFSALSKLGVLDISHNELTGNLQYLEDLQNLVVLNISYNNLSGRMPDKPFFSKLPLSVLEGNPSLCFPGNRCPGDISKRSIRRTKAARIAMVVLLCIACLLFLTALYVFVAAKRRWLTEGDLDLNGGDSDVEMGPPWEVTLYQKLDLSIYDVARCLTVGNVIGRGRSGVVYRVDLPSGLTIAVKRYRLSEKFSASSFSSEIATLARIRHRNIVRLLGWAANRKTKLLLYDYLPNGNLDTLLHEGCRGFIEWETRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDTHEPCLADFGFARLVDDDHSPFSVNPQFAGSYGYIAPEYGCMMRIREKSDVYSYGVVLLEIITGKRPIIEACTAEEEEEGQHLIGWVRQKLKSKRDPTEIVDSKLHGLPHTQVQEMLQALGIALLCTSQRPDDRPTMKDVAALLREIRPDPSLSSDLPHKPPVPTASSASNVHGLSSPKTTPHPSSFALSSDLSLLQSSSHNSLALYHLPPT 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0582 1202 FunFam Nuclear pore complex protein NUP107 108 265 - -
Acco13g0582 1202 ProSiteProfiles Protein kinase domain profile. 856 1143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0582 1202 FunFam Leucine-rich repeat receptor protein kinase EMS1 385 484 - -
Acco13g0582 1202 SMART LRR_sd22_2 464 493 - -
Acco13g0582 1202 SMART LRR_sd22_2 560 583 - -
Acco13g0582 1202 SMART LRR_sd22_2 223 249 - -
Acco13g0582 1202 SMART LRR_sd22_2 608 623 - -
Acco13g0582 1202 SMART LRR_sd22_2 344 370 - -
Acco13g0582 1202 SMART LRR_sd22_2 705 730 - -
Acco13g0582 1202 MobiDBLite consensus disorder prediction 1154 1178 - -
Acco13g0582 1202 ProSitePatterns Serine/Threonine protein kinases active-site signature. 976 988 IPR008271 GO:0004672|GO:0006468
Acco13g0582 1202 Gene3D Phosphorylase Kinase; domain 1 848 931 - -
Acco13g0582 1202 Pfam Protein kinase domain 858 1130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0582 1202 SUPERFAMILY RNI-like 155 478 - -
Acco13g0582 1202 Gene3D Transferase(Phosphotransferase) domain 1 932 1146 - -
Acco13g0582 1202 Gene3D Ribonuclease Inhibitor 260 363 IPR032675 -
Acco13g0582 1202 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 266 358 - -
Acco13g0582 1202 ProSiteProfiles Leucine-rich repeat profile. 586 608 IPR001611 GO:0005515
Acco13g0582 1202 SMART LRR_typ_2 464 488 IPR003591 -
Acco13g0582 1202 SMART LRR_typ_2 560 583 IPR003591 -
Acco13g0582 1202 SMART LRR_typ_2 416 440 IPR003591 -
Acco13g0582 1202 SMART LRR_typ_2 199 223 IPR003591 -
Acco13g0582 1202 SMART LRR_typ_2 368 392 IPR003591 -
Acco13g0582 1202 SMART LRR_typ_2 728 761 IPR003591 -
Acco13g0582 1202 SMART LRR_typ_2 632 656 IPR003591 -
Acco13g0582 1202 SMART LRR_typ_2 247 271 IPR003591 -
Acco13g0582 1202 ProSitePatterns Protein kinases ATP-binding region signature. 862 884 IPR017441 GO:0005524
Acco13g0582 1202 Gene3D Ribonuclease Inhibitor 364 443 IPR032675 -
Acco13g0582 1202 SUPERFAMILY RNI-like 403 746 - -
Acco13g0582 1202 Gene3D Ribonuclease Inhibitor 683 773 IPR032675 -
Acco13g0582 1202 Gene3D Ribonuclease Inhibitor 444 682 IPR032675 -
Acco13g0582 1202 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 490 776 - -
Acco13g0582 1202 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 932 1150 - -
Acco13g0582 1202 SMART serkin_6 856 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0582 1202 PRINTS Leucine-rich repeat signature 705 718 - -
Acco13g0582 1202 PRINTS Leucine-rich repeat signature 659 672 - -
Acco13g0582 1202 Pfam Leucine rich repeat 442 501 IPR001611 GO:0005515
Acco13g0582 1202 Pfam Leucine rich repeat 635 694 IPR001611 GO:0005515
Acco13g0582 1202 Pfam Leucine rich repeat N-terminal domain 109 148 IPR013210 -
Acco13g0582 1202 SUPERFAMILY Protein kinase-like (PK-like) 843 1134 IPR011009 -
Acco13g0582 1202 MobiDBLite consensus disorder prediction 1140 1178 - -
Acco13g0582 1202 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 545 1135 - -
Acco13g0582 1202 Gene3D Ribonuclease Inhibitor 107 259 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0582 Acco-ChrAcco13 4223586 4227888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0582 105 1138 Receptor kinase-like Gene Family AT5G56040 54.511 0.0 1065
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Acco13g0582 Pkinase 8.1e-41 CL0016