Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0577 ATGGCATCATCATCAAGCTCTTACTCATCTCCATGCGCTGCCTGCAAATTCCTGAGAAGAAAATGCATGCCAGGTTGCATCTTCGCGCCTTATTTCCCGCCAGAGGAGCCTCAAAAATTCGCGCACGTGCACAAAATCTTCGGAGCCAGCAACGTTACCAAGCTCCTCAACGAGCTCCTTCCTCACCAGAGAGAAGACGCCGTCAACTCTCTCGCCTACGAAGCAGAGGCGCGTGTCAGAGACCCCGTTTACGGCTGCGTCGGCGCCATCTCCTTCCTTCAAAGACAGGTTCAGAGGCTTCAGAAGGAGCTCGACGCCGCCAACGCCGACCTCCTCCGTTATGCCTGCAACGAGCTCCCTCCGCCGCCGGCTAATTCTCTCTCCATGGTCCCACCACCTGGTTTAGGAATCACGCCTTCAGCGCTCCAAATCCAACAACTCCCTCAGAGGCCAAGGTCGACCACCATGGAATATATTAATGGCAGTGGTGGGTTGTACAGGCAATTTCCGGCGGCTTATAATTACTCTCTTCCTCACACTATTCCATGGGCTGATACGGCTTCTGATGGCATCGATGAGGGAGCTGCTGCAGCAGGAGGAGGTGGCGCTGGAGGTAATTTGCTTACACTTCGAAACTGTTACTATCAGCAACACTTGCCCCCAGATAAATACAGTGAAACAGTGAGAGACAATGAACAGAAAGTCACTAACACAACTCTCTCATGGACTGCAGCTAGCTACATTGACGACGACAACTTGCATGCATTCCCATTATAA 777 0.5225 MASSSSSYSSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFAHVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYACNELPPPPANSLSMVPPPGLGITPSALQIQQLPQRPRSTTMEYINGSGGLYRQFPAAYNYSLPHTIPWADTASDGIDEGAAAAGGGGAGGNLLTLRNCYYQQHLPPDKYSETVRDNEQKVTNTTLSWTAASYIDDDNLHAFPL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0577 258 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Acco13g0577 258 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Acco13g0577 258 Coils Coil 90 117 - -
Acco13g0577 258 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0577 Acco-ChrAcco13 4163210 4165466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0577 1 185 AS2 family AT5G63090 65.054 5.09e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco13g0577 LOB 1.5e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2545 04 42326373 42326882 Acco13g0577 13 4163210 4165466 CCT
Acco04g2545 04 42326373 42326882 Acco13g0577 13 4163210 4165466 ECH
Acco13g0577 13 4163210 4165466 Acco13g0577 13 4163210 4165466 ECH