Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0570 ATGTCCATACAAAGATTCTGCCGTCCCTTGGAGTTTGTCCAAACTGTCAATCGCGGCGCGAAAGCTCTTACAGAAGAGGCGGAAATGACGACCAGATTCAAGAAGAACAGGAAGAAGAGAGGACATGTGAGTGCTGGACATGGCCGTATCGGCAAGCACCGGAAGCACCCGGGAGGTCGAGGTAACGCGGGAGGCATGCACCATCACCGTATCCTCTTCGACAAGTACCATCCTGGTTACTTCGGTAAGGTTGGTATGCGTTACTTTCACAAGCTTCGCAACAAGTTTTATTGCCCCATTGTCAACATAGACAAGCTCTGGTCCTTGCTTCCTCAAGAGGTGAAGGACAAAGCTTCCAAGGATAGCGCTCCCGTGGTCGATGTTACTCAACATGGCTATTTTAAGGTTTTGGGTAAAGGAGTTTTGCCAGAGAACCAGCCTGTGGTTGTAAAGGCCAAGCTTGTGTCCAAGAATGCAGAGAAGAAAATCAAGGAGGCTGGCGGAGCTGTTGTCCTTACTGCTTAA 525 0.4952 MSIQRFCRPLEFVQTVNRGAKALTEEAEMTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKLWSLLPQEVKDKASKDSAPVVDVTQHGYFKVLGKGVLPENQPVVVKAKLVSKNAEKKIKEAGGAVVLTA 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0570 174 ProSitePatterns Ribosomal protein L15 signature. 135 167 IPR001196 GO:0003735|GO:0005840|GO:0006412
Acco13g0570 174 MobiDBLite consensus disorder prediction 31 62 - -
Acco13g0570 174 FunFam 60S ribosomal protein L27a 86 174 - -
Acco13g0570 174 SUPERFAMILY Ribosomal proteins L15p and L18e 34 173 IPR036227 -
Acco13g0570 174 MobiDBLite consensus disorder prediction 34 62 - -
Acco13g0570 174 Gene3D - 86 174 - -
Acco13g0570 174 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 56 171 IPR021131 -
Acco13g0570 174 Hamap 50S ribosomal protein L15 [rplO]. 29 173 IPR030878 GO:0003735|GO:0006412|GO:0015934
Acco13g0570 174 PANTHER 60S RIBOSOMAL PROTEIN L27A 29 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0570 Acco-ChrAcco13 4098436 4099502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0570 29 174 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 87.671 1.07e-95 272
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2538 04 42212439 42216926 Acco13g0570 13 4098436 4099502 CCT
Acco04g2538 04 42212439 42216926 Acco13g0570 13 4098436 4099502 ECH
Acco13g0570 13 4098436 4099502 Acco13g0570 13 4098436 4099502 ECH