Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0562 ATGAGTTCTTCCATGGAGGTTACCCTGCAAAATCCCCCAGTTGACGAAATATTGGAGCAAAATGGTGTCGCCGCCCAAGACCCAGCTCCTTCTCCCATGCTTTCTGTAGAGAAGGTTATCGTCTCTGTCGAAGTAAGTTTGAAACCTTCGAGTACAGCTAGGAACGCAGATGTCCGTTCAGCCGTCGAGAGGATGCTCGAGAACAGGTGTTTGAGCTATACTGATGGACCCATTCCTCTGCCTCTTGATGACTCGTTTCTTTCAGAGAACGTGCAGAGAATCTGTATTTGCGATACTGATGAGTCGACCAGCAGTCATAACATTCTTTTGTTCTGGCAAGTCAAGCCTGATGTGCATGTCTTTCAGCTTAGTGAAGAAGGACCATGTGAGGAAATAAGTACAGATGGCCAACCTTCCAGCTTCAATGAATGGATTCTTCCAGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTCAAGCAAAGATTGTTAAGATATGCAGCGAGCGCTTTGCTTTTTACTGAAAAGGGCGTTGATCCATTTCTGGTTTCATGGAACCGCATTGTTCTCTTACATGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCACTAGCACAAAAACTATCCATTCGATTCAATCAAAGATACCCCCAGTGTCAGCTGATTGAAGTTAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTTGCAAAGCTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAACAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGTCTTGCTGCTGCCAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCAGACTCTATTCGGGTTGTCAATGCATTGTTAACTCAGATGGACAAGTTAAAATCTTCTCCAAATGTGATAATTCTAACTACATCCAACATAACTACTGCTATCGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGTCCTCCAACTCTCCAAGCTCGCTATGAAATACTGAAGTCGTGTTTGGAGGAATTGATGCGCACAGGGATTTTGACAAGTTCACAGGATTGTATGGACATCAAGCTTCCAAATTATGCTAATGCTAAGGAAAAGTTGAATACACCTGAGAATCATGAAGCCTCTCAACTGTGTAAACAATTACTCGAAACTGCAGAGGCATGTGAGGGAATGAGCGGAAGATCTTTGAGAAAGGTTCCATTCTTGGCACACGCTGCCCTTGCCAATCCTTCAGATTGCAACCCATTTAAGTTCTTATGTACAATGATAGAAACAGCGAAGAGGGACCGCTCTGAGCTTCCCGACTGA 1362 0.4266 MSSSMEVTLQNPPVDEILEQNGVAAQDPAPSPMLSVEKVIVSVEVSLKPSSTARNADVRSAVERMLENRCLSYTDGPIPLPLDDSFLSENVQRICICDTDESTSSHNILLFWQVKPDVHVFQLSEEGPCEEISTDGQPSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFNQRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITTAIDIAFVDRADIKAYVGPPTLQARYEILKSCLEELMRTGILTSSQDCMDIKLPNYANAKEKLNTPENHEASQLCKQLLETAEACEGMSGRSLRKVPFLAHAALANPSDCNPFKFLCTMIETAKRDRSELPD 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0562 453 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 34 450 IPR044539 -
Acco13g0562 453 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 308 322 IPR001270 GO:0005524
Acco13g0562 453 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 194 212 IPR001270 GO:0005524
Acco13g0562 453 FunFam pachytene checkpoint protein 2 homolog 134 356 - -
Acco13g0562 453 CDD RecA-like_Pch2-like 140 338 - -
Acco13g0562 453 ProSitePatterns AAA-protein family signature. 312 331 IPR003960 GO:0005524|GO:0016887
Acco13g0562 453 SMART AAA_5 190 342 IPR003593 GO:0016887
Acco13g0562 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 420 IPR027417 -
Acco13g0562 453 Pfam ATPase family associated with various cellular activities (AAA) 194 339 IPR003959 GO:0005524|GO:0016887
Acco13g0562 453 Gene3D - 137 357 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0562 Acco-ChrAcco13 4066230 4072068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0562 194 360 Calmodulin-binding Proteins AT3G56690 29.586 3.00e-13 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g0562 13 4066230 4072068 Acco13g0562 13 4066230 4072068 ECH