Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0558 ATGGCGATTTCTTCTGCATCTGCTTCTGCTTCCTCCAAGCTCATATTCCTTCATCCATCTCCCTCTCCTTCCTCTTCTTCCTCCTCTTCTCTCTCTCTAAACCCTCACAAACTCACATCCCCCACAGCCCATCTCTCATCTTCCTTCATTAACCCCTCCACAATCCTCCACCTCTCTCCCTCCTCCACCTCCTCCGCCACCACGCGCCACCGCTCATTCACTGTCCGAGCTGCTCGCGGCAAGTTCGAGAGGAAGAAACCCCATGTTAACATCGGCACCATTGGCCATGTCGACCACGGTAAGACCACTCTCACTGCCGCTCTTACCATGGCTCTAGCGGCTCTGGGAAACAGTGCCCCAAAGAAATACGACGAAATTGACGCTGCCCCTGAAGAACGAGCTCGTGGAATTACCATTAATACTGCCACTGTCGAGTATGAGACTGAGAATCGCCATTACGCCCACGTCGATTGTCCTGGCCACGCCGATTATGTCAAGAACATGATTACCGGTGCTGCTCAGATGGACGGCGCTATTCTTGTTGTTTCCGGCGCCGACGGTCCAATGCCGCAGACTAAGGAGCATATACTTTTGGCTAAGCAAGTGGGTGTCCCAAATATGGTCGTGTTTCTAAACAAGCAAGACCAGGTTGATGACGAGGAGCTTCTGCAACTTGTGGAATTAGAGGTTCGTGAGCTTCTTTCTTCTTATGAATTCCCTGGTGACGATGTTCCCATTATTTCTGGTTCTGCTCTATTAGCTTTGGAGGCATTGATGGCGAATCCTGCCATTAAACGAGGAGAAAACCAATGGGTAGACAAAATTTACGAACTTATGGATTCTGTGGATAGCTACATCCCAATTCCTCAGCGTCAAACTGATCTTCCTTTCTTGCTGGCCATTGAAGACGTGTTTTCAATCACTGGCCGTGGGACTGTGGCCACAGGACGTGTTGAGAGAGGTACAATTAAGGTCGGTGACACGGTAGATATTGTTGGCGTAAGAGAAACCAGAAACACAACTGTGACTGGGGTAGAAATGTTCCAGAAAATTCTTGATGAGGCCATGGCTGGGGATAATGTGGGATTGTTGTTGAGAGGTATTCAGAAGATTGATATTCAGAGAGGCATGGTTTTGTCTAAGCCAGGCACCATTACTCCACACACCAAGTTCGAAGCAATTGTGTATGTGCTGAAGAAGGAAGAAGGAGGAAGGCACTCACCGTTCTTTGCTGGTTACAGGCCACAGTTCTACATGAGGACTACTGATGTGACTGGGAAAGTGACTGCCATAATGAATGATAAGGATGAAGAATCAAAGATGGTTATGCCAGGAGATCGAGTTAAGATGGTGGTTGAACTTATAGTGCCAGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAGACTGTTGGAGCTGGTGTCATTCAATCGATCATTGAGTGA 1458 0.4815 MAISSASASASSKLIFLHPSPSPSSSSSSSLSLNPHKLTSPTAHLSSSFINPSTILHLSPSSTSSATTRHRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPAIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKVGDTVDIVGVRETRNTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKIDIQRGMVLSKPGTITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0558 485 CDD EFTU_III 386 480 - -
Acco13g0558 485 Pfam Elongation factor Tu C-terminal domain 384 483 IPR004160 -
Acco13g0558 485 NCBIfam elongation factor Tu 78 485 IPR004541 GO:0003746|GO:0005525|GO:0006414
Acco13g0558 485 Pfam Elongation factor Tu GTP binding domain 86 287 IPR000795 GO:0003924|GO:0005525
Acco13g0558 485 PANTHER ELONGATION FACTOR TU-RELATED 59 484 - -
Acco13g0558 485 Hamap Elongation factor Tu [tuf]. 77 485 IPR004541 GO:0003746|GO:0005525|GO:0006414
Acco13g0558 485 Gene3D Translation factors 292 420 - -
Acco13g0558 485 FunFam Elongation factor Tu 77 289 - -
Acco13g0558 485 Pfam Elongation factor Tu domain 2 311 379 IPR004161 GO:0005525
Acco13g0558 485 FunFam Elongation factor Tu 292 420 - -
Acco13g0558 485 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 384 484 IPR009001 -
Acco13g0558 485 PRINTS GTP-binding elongation factor signature 207 216 IPR000795 GO:0003924|GO:0005525
Acco13g0558 485 PRINTS GTP-binding elongation factor signature 154 164 IPR000795 GO:0003924|GO:0005525
Acco13g0558 485 PRINTS GTP-binding elongation factor signature 90 103 IPR000795 GO:0003924|GO:0005525
Acco13g0558 485 PRINTS GTP-binding elongation factor signature 170 181 IPR000795 GO:0003924|GO:0005525
Acco13g0558 485 PRINTS GTP-binding elongation factor signature 134 142 IPR000795 GO:0003924|GO:0005525
Acco13g0558 485 SUPERFAMILY Translation proteins 291 387 IPR009000 -
Acco13g0558 485 NCBIfam small GTP-binding protein domain 89 221 IPR005225 GO:0005525
Acco13g0558 485 CDD EF_Tu 87 289 IPR041709 -
Acco13g0558 485 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 86 290 IPR000795 GO:0003924|GO:0005525
Acco13g0558 485 FunFam Elongation factor Tu 424 484 - -
Acco13g0558 485 Gene3D - 78 289 IPR027417 -
Acco13g0558 485 Gene3D Translation factors 424 484 - -
Acco13g0558 485 CDD EFTU_II 297 383 IPR033720 -
Acco13g0558 485 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 127 142 IPR031157 -
Acco13g0558 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 312 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0558 Acco-ChrAcco13 4043818 4045275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0558 84 483 Eukaryotic Initiation Factors Gene Family AT5G60390 29.318 7.56e-46 164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g0558 13 4043818 4045275 Acco13g0558 13 4043818 4045275 ECH