Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0546 ATGGCGGAAACATGCCTTCTTTCTTTGCCCTCACTATTGTGCAACAAAACCAAACACCCCCATTTCTCATCAATTCCTTCTAAACCCCTCAACCTTCAGCTCTCATGCTCCAACTCTTCACTCTTTTTACCTTCTCCATCTCTCATCAAGAGGACTCATTCTTCCTCTATATTGACATTTGTTGCACAGACATCGGATTGGGCTCAGCAAGAAGCTGACAACACAGTTTCTGTTGGAGACGATGGAGCCGCCTTGGAAAATCAAGAGGTTGACAATACCGAAGCTGGCCTTTCAGACTTGGAGGCTGAGGGTGGTGAAGACAGGATTTTAGAGGAGGGGGGATACGAAGAACCGCCTGAAGATGCCAAAATCTATGTCGGTAACTTGCCTTTCGATGTTGATAGCGAAAAATTGGCTATGCTTTTTGAGCAAGCTGGAACTGTTGAAATTGCCGAGGTGATTTATAACAGGGAGACCGACCAAAGTCGTGGGTTCGCATTTGTAACGATGAGCACAGTTGAAGAAGCCGAGAAAGCTGTAGAAAAGTTCAGCCGCTACGATTTAGATGGAAGACTACTGACTGTTAATAAGGCTGGTCCAAGAGGATCAAGGCCTGAACGTCCACCTCGTGCCTCCGAACCCGCTTTCAGAATCCACGTTGGCAACCTGCCGTGGGGTGTTGATAATGCTCGCCTGGAGCAAATCTTCAGTGAACAGGGCACGGTCGTGAATGCTCGGATATTTTATGACAGAGAGACTGGACGATCACGCGGTTTTGGATTCGTCACAATGGCCAGTGAGACAGAAATGAATGATGCTATTGCTGCTCTTGATGGTCAGAGTGTGGATGGGAGAGCGATCAGAGTGAGTGCTGCTGAGGAAAGGCCCAGGCGTGGCTCCTTTTGA 906 0.4812 MAETCLLSLPSLLCNKTKHPHFSSIPSKPLNLQLSCSNSSLFLPSPSLIKRTHSSSILTFVAQTSDWAQQEADNTVSVGDDGAALENQEVDNTEAGLSDLEAEGGEDRILEEGGYEEPPEDAKIYVGNLPFDVDSEKLAMLFEQAGTVEIAEVIYNRETDQSRGFAFVTMSTVEEAEKAVEKFSRYDLDGRLLTVNKAGPRGSRPERPPRASEPAFRIHVGNLPWGVDNARLEQIFSEQGTVVNARIFYDRETGRSRGFGFVTMASETEMNDAIAALDGQSVDGRAIRVSAAEERPRRGSF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0546 301 FunFam 31 kDa ribonucleoprotein, chloroplastic 206 300 - -
Acco13g0546 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 193 IPR000504 GO:0003723
Acco13g0546 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 288 IPR000504 GO:0003723
Acco13g0546 301 CDD RRM2_NsCP33_like 217 292 - -
Acco13g0546 301 Coils Coil 83 103 - -
Acco13g0546 301 SUPERFAMILY RNA-binding domain, RBD 208 299 IPR035979 GO:0003676
Acco13g0546 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Acco13g0546 301 MobiDBLite consensus disorder prediction 85 105 - -
Acco13g0546 301 PANTHER OS02G0815200 PROTEIN 24 296 - -
Acco13g0546 301 Gene3D - 205 300 IPR012677 -
Acco13g0546 301 Gene3D - 62 204 IPR012677 -
Acco13g0546 301 FunFam 31 kDa ribonucleoprotein, chloroplastic 62 205 - -
Acco13g0546 301 SUPERFAMILY RNA-binding domain, RBD 117 210 IPR035979 GO:0003676
Acco13g0546 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 294 IPR000504 GO:0003723
Acco13g0546 301 SMART rrm1_1 217 290 IPR000504 GO:0003723
Acco13g0546 301 SMART rrm1_1 123 196 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0546 Acco-ChrAcco13 3959050 3960808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0546 120 298 Eukaryotic Initiation Factors Gene Family AT3G16380 34.043 2.01e-20 89.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2491 04 41688599 41691243 Acco13g0546 13 3959050 3960808 CCT
Acco04g2491 04 41688599 41691243 Acco13g0546 13 3959050 3960808 ECH
Acco13g0546 13 3959050 3960808 Acco13g0546 13 3959050 3960808 ECH