Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0540 ATGCTCTCTAGCTATTCGTGGCATGCAAAAGTGGTGCTAACTTTATCAGCCTTGGCTGTTAACTCCGGAGAATTCCGGCTAGTTGCTCAGTTGGGTGCTACAAATACACTTGCCAAATCTGTGGCCCTGCTCAAGCAATTGCCTAACCTTGTAGAGAACCATTCCCATCTTAAACAGCAATTTGATAGACTCATCAAGCTAGAGAAGGCCATTCTTGATGTGACCAATTGTGTATCGTTGAGTTCAAAGAGCTGCCCACTGAGTACATTTCAGAGGACACAGCTCCAATGTCTGTTGCCAGTCCTCATATTCCCGAATCCCGATGCTTCCTATTGGAGTATCCGAAGTATTGTGGCTTGTGCTTCACAGATTGCAAGTCTTGTTGGATTGAGAAATGAGTACGGCTCAACCGCCACAGAGGCACGGGAAATATCAAGCTTGGCACATAAGATGAGCAGTATACATGAGCATCTTCAAAATCAACTGGCTATCTGCTACCAATATCTAGGTGACAACATCAGAATCAGCATTTTAATGATAAGAGGCAAACAGAGGCCATTCATTCACAATTTGGCTAGTCTTTTTGAGACAGCCGACGTAGAGAACTTGAAAATTCTTAGGGCATTGATATACGCCAAGGAAGATCTACCCCATCTCATAAATGGATCTACCAAAACAATTTTCGGCATTGATCCTACAATTCTAGAACGGGTGATGACATTGTTGAGCTTTGACGGTGGCGACCGAGAGTGCGCTATATTCTTTAGAGGACCAAATGAAATGGCCAGATCTAATGGAGACGTTGCGCTGGCATACCTGAGAGACTTGGAGAACCGGAAGGAAAGTCTAATAAGAGATGGATTCCTTCACCTTCAGGCCTTGGATGGATATCTGTTAGGAATGGTGAAAGGTGAGGTAAAGAAGGATGATGTTTGCGACCGTGAGTGTTTTGTTGAAGGGCTCAAAGCCAAAGCAGCAGCGTTGACTGAAGTACGATGTAGCAAGAAGCCTCAGCTTCCCCGTATTTCGTCTTCCTCTCTGGTCATGGCTCTCCCTACTGCAAATTCACACCTCTTATTACTCTTTTCATTCTTCTCTCTTTTCTTCTTCATCCCCCGTGCCAAAATCGATATCAATCCTTCAGATCTCAAAGCTTTCTTGAATTTTCACAAGGACTTGGGTTTCAACGGTCAACGCCAACCGTTTACCAATCACCCATGTGACATTGAAGGTGTCTTCTGCGAGAGGAGGCTCTCCGGCAACGAGAGCTATGTTCTCAGAATCACCAGAATCATCTTCAACTCTAAGAAGCTTAATGGAGTTTTGTCTCCTGCCATTGGCCGTCTCTCTGAGCTCAAGGAGCTTTCTCTTTCGGACAACCAACTCACGAGTCAAATTCCAACTCAGATTGCTGACTGCCGGAAGCTGGAGATTCTTGACATCGGAAACAACAGCTTCTCCGGCGAGGTCCCTTCTGAATTGTCATCCCTCATTCGACTCCGAGTGCTTGACATATCTTCCAACAAATTCTCGGGCTATTTGAATTTCTTGAAGTATTTCCCCAACCTGGAAACTCTCTCTGTGGCGGACAACCTCTTCACGGGGAGAATTCCGGCGTCGGTTCGCTCATTTCGCAATCTCCAACTCTTCAACTTCTCTGGGAATCACTTCCTTGAAATTCCTCCCCCATTGTTGAAGAAATTCGGACACTCAGCACCTGTTATCCCCAAAAGATACATCCTCACCGAGAATTCAGCTCCACCAACAAGTCAAGGAATTTCAGCTCCTCCTCCAAAAGCCAGAAAGCCCCGTTCTAATACTTCATCAATTCAAGATGCTCCGGCTCAAGCTCCAACAGCACAACACCACGAACACAAGTCAAAAAAGAGGAAACTAGGTGGATGGATTCTTGGATTCCTAGCAGGAGCATTCGCTGGGAGCATATCTGGGTTCATATTTTGTTTGCTGTTCAAGTTGGCCGTGGCTGTGATCAAAGGAGGAGGGAAGAGCTCTGGCCCTGCAATCTACAGTCCATTGATTAAAAAAGCTGAGGACTTGGCCTTTCTGGAGAAAGAAGATGGAGTAAGCTCCTTAGAAATCATCGGAAAAGGAGGATGTGGAGAAGTTTACAAGGCTGAATTACCGGGAAGCAACAAAATCATTGCTATCAAGAAGGTCGTTCAACCTTCAAAAGATGCAGCTGAACTCTCTGAAGAAGACAGTAAGCTTCTGAACAAAAAAATGCGCCAAATTCGATCAGAGATCAACACGGTCGGCCAAATTCGACACCGAAACCTACTGCCTCTGCTAGCTCACGTATCCAGGCCCGATTGTCACTACCTTGTGTACGAGTACATGAAGAATGGGAGCTTGCAAGATGTGTTAAATCAAGTCCAAGCAGGCGCAAGAGAGTTGGATTGGTTGGCACGTCACAAGATTGCAGTTGGTGTAGCATCTGGCCTAGAGTACCTTCACATGCATCATACTCCTCGTATTATTCACAGAGATCTCAAGCCTGGGAATATTCTTCTTGATGATGACATGGAAGCGAGAATTGCAGATTTTGGGCTTGCAAAAGCAATGCCAGAAGCTTATACACATGTCTCAACTTCAAACGTGGCAGGAACTGTGGGCTACATAGCACCAGAATATCACCAGACTGTGAAATTCACTGACAAGTGTGACATTTACAGCTTTGGGGTTGTTCTTGGGATCTTGGTGATGGGGAAGATTCCATCTGATGCTTTCTTCCAGGAAACTGAGGAGCTGAGTTTGGTGAAGTGGATGAGGAACGTGATGACGTCAGATAATCCGACGAGGGCGATTGATGAAAAGCTCAGAGGAAATGGGTATGAGGAGCAGATGCTTCTGGTTCTTAAGATTGCTTGCTTTTGCACTCTTGATGATCCTAAAGAGAGGCCTAACAGTAAAGACATCAGATGCATGTTGTCCCAAATTAAGCACTGA 2967 0.454 MLSSYSWHAKVVLTLSALAVNSGEFRLVAQLGATNTLAKSVALLKQLPNLVENHSHLKQQFDRLIKLEKAILDVTNCVSLSSKSCPLSTFQRTQLQCLLPVLIFPNPDASYWSIRSIVACASQIASLVGLRNEYGSTATEAREISSLAHKMSSIHEHLQNQLAICYQYLGDNIRISILMIRGKQRPFIHNLASLFETADVENLKILRALIYAKEDLPHLINGSTKTIFGIDPTILERVMTLLSFDGGDRECAIFFRGPNEMARSNGDVALAYLRDLENRKESLIRDGFLHLQALDGYLLGMVKGEVKKDDVCDRECFVEGLKAKAAALTEVRCSKKPQLPRISSSSLVMALPTANSHLLLLFSFFSLFFFIPRAKIDINPSDLKAFLNFHKDLGFNGQRQPFTNHPCDIEGVFCERRLSGNESYVLRITRIIFNSKKLNGVLSPAIGRLSELKELSLSDNQLTSQIPTQIADCRKLEILDIGNNSFSGEVPSELSSLIRLRVLDISSNKFSGYLNFLKYFPNLETLSVADNLFTGRIPASVRSFRNLQLFNFSGNHFLEIPPPLLKKFGHSAPVIPKRYILTENSAPPTSQGISAPPPKARKPRSNTSSIQDAPAQAPTAQHHEHKSKKRKLGGWILGFLAGAFAGSISGFIFCLLFKLAVAVIKGGGKSSGPAIYSPLIKKAEDLAFLEKEDGVSSLEIIGKGGCGEVYKAELPGSNKIIAIKKVVQPSKDAAELSEEDSKLLNKKMRQIRSEINTVGQIRHRNLLPLLAHVSRPDCHYLVYEYMKNGSLQDVLNQVQAGARELDWLARHKIAVGVASGLEYLHMHHTPRIIHRDLKPGNILLDDDMEARIADFGLAKAMPEAYTHVSTSNVAGTVGYIAPEYHQTVKFTDKCDIYSFGVVLGILVMGKIPSDAFFQETEELSLVKWMRNVMTSDNPTRAIDEKLRGNGYEEQMLLVLKIACFCTLDDPKERPNSKDIRCMLSQIKH 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0540 988 Pfam Leucine rich repeat 451 510 IPR001611 GO:0005515
Acco13g0540 988 Gene3D Phosphorylase Kinase; domain 1 695 789 - -
Acco13g0540 988 FunFam Leucine-rich repeat receptor protein kinase EMS1 422 517 - -
Acco13g0540 988 Gene3D Transferase(Phosphotransferase) domain 1 790 988 - -
Acco13g0540 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Acco13g0540 988 Gene3D Ribonuclease Inhibitor 379 576 IPR032675 -
Acco13g0540 988 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 426 987 - -
Acco13g0540 988 SUPERFAMILY Protein kinase-like (PK-like) 688 983 IPR011009 -
Acco13g0540 988 MobiDBLite consensus disorder prediction 585 627 - -
Acco13g0540 988 SUPERFAMILY L domain-like 403 567 - -
Acco13g0540 988 ProSiteProfiles Protein kinase domain profile. 695 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0540 988 FunFam Leucine-rich repeat receptor-like protein kinase 786 988 - -
Acco13g0540 988 FunFam leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 682 785 - -
Acco13g0540 988 SMART serkin_6 695 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0540 988 Pfam Sieve element occlusion C-terminus 233 299 IPR027944 -
Acco13g0540 988 Pfam Protein kinase domain 697 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0540 988 MobiDBLite consensus disorder prediction 601 616 - -
Acco13g0540 988 Pfam Sieve element occlusion N-terminus 1 174 IPR027942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0540 Acco-ChrAcco13 3907278 3917803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0540 349 988 Receptor kinase-like Gene Family AT2G31880 61.715 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Acco13g0540 Pkinase 2.1e-44 CL0016