Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0534 ATGATGGCCAAGTCTTGTTTTCAATCGCAAGAAGATATTGCGAATGAAGCTATAAAGCACGCTTTGAAGGCTTTGCGGAAGCGGCATTTAGCTGAAGAAGGCGCTCATGCTCCGGCTTTTGAAGCTCTTTCCAGGCCTTTCGTTTCCCAGGGCTCTGAGTGGAAGGAGAAAGCAGAGAAACTGGAAGAGGAACTTCAACAAATCTACAAAGCGCAATCCCGACTGTCCGAGCAACTGGTTGTTGAAGTAGCTGAATCAAGAGCTTCAAAAGCTTTGGCTCAAGAGAAAGAGGCTGCAATCAATGATCTGCAAAAGGAGCTGACTGAATTCAGGGATGAAAGCTCTCAATTAAAGAAAGACTTAGAAGAAAAGATTAAAGCTCTCGAATTGATTGTTAGTGAGAATGCAGAACTTAAAGCGCAGTTGGAACAGATGACTCTCAAAGCCAAGAATACTGAGGCTGAAAACAAGATGTTAGTTGACCGGTGGATGCTGGAAAAGATGAAGGATGCTGAACGTCTCAATGAGGTAAATTCGCTGTATGAAGATGTGGTTGGACGGCTAAAGGCGAGTGATTTAGAAAAACTAGCAAAGCAGCAAGTAGATGGCATAGTTCGACGAGGTGAAGAAGGCGCAGAGTTCTTTCTAGAGTCATCTAATCCCTCAACATGTAAATACAGGCTCCAAGCCCATGAAGGTGGCTGTGCTTCTTCTTTGTTTGTGTACAACTCCAGTAAATTGATTACTGGGGGACATGATCGGTCAGTTAAAGTGTGGGACACTAATACAGGAGCACTGAGTTCTAATCTTTCTGGCTGCCTTGGCTCTGTCTTGGACCTCACAGTTACCCATGACAATCAATCTGTTATTGCTGCTAGCAGCTCAAACAACTTGTTTGTGTGGGATGTCAACTCAGGCCGGGTTCGTCACACCCTTACTGGTCATACAGATAAAGTGTGTGCTGTTGATGTCAGCAAGGCTTCGAGTCGCCATGTTGTCAGTTCAGCATATGATCGAACTATCAAAGTTTGGGACTTGGTAAAAGGTTACTGCACCAACACAATAATCTTTTACAGCAACTGTAATGCTCTTTGCTTCAGCATGGATGGACTGACCATATTTTCTGGTCATGTTGATGGAAATCTTCGGTTATGGGATATTCAGTCTGGAAGGCTACTTAGTGAGGTTGCTGCACATTCGGCTGCAGTCACTTCAATATCTCTCTCTCGAAATGGAAACGTTGTGTTGACCAGTGGAAGGGACAACATACACAATATGTTTGATGTGCGGACTCTGGAGGTTTGTGGCACACTGAGAGCAACAGGAAACAGAGTGTCATCTAATTGGAGCCGCTCGTGCATGAGTCCTGATGATACCCATGTGGCTGCTGGATCTGCTGATGGATCTGTTCATATTTGGTCTGTATCCAAGTCTAATATTGTCAGTACTCTGAAGGAACACAATTCACCTGTGTTGTGTTGTACATGGAGTGGACTTGGAAAGCCTCTCGCCTCAGCTGACAAGAATGGAGTGGTTTGTGTCTGGACCTGA 1551 0.4475 MMAKSCFQSQEDIANEAIKHALKALRKRHLAEEGAHAPAFEALSRPFVSQGSEWKEKAEKLEEELQQIYKAQSRLSEQLVVEVAESRASKALAQEKEAAINDLQKELTEFRDESSQLKKDLEEKIKALELIVSENAELKAQLEQMTLKAKNTEAENKMLVDRWMLEKMKDAERLNEVNSLYEDVVGRLKASDLEKLAKQQVDGIVRRGEEGAEFFLESSNPSTCKYRLQAHEGGCASSLFVYNSSKLITGGHDRSVKVWDTNTGALSSNLSGCLGSVLDLTVTHDNQSVIAASSSNNLFVWDVNSGRVRHTLTGHTDKVCAVDVSKASSRHVVSSAYDRTIKVWDLVKGYCTNTIIFYSNCNALCFSMDGLTIFSGHVDGNLRLWDIQSGRLLSEVAAHSAAVTSISLSRNGNVVLTSGRDNIHNMFDVRTLEVCGTLRATGNRVSSNWSRSCMSPDDTHVAAGSADGSVHIWSVSKSNIVSTLKEHNSPVLCCTWSGLGKPLASADKNGVVCVWT 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0534 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 455 483 IPR001680 GO:0005515
Acco13g0534 516 PANTHER AUTOPHAGY PROTEIN 16-LIKE 11 487 IPR045160 GO:0000045
Acco13g0534 516 FunFam Autophagy-related protein 16 212 516 - -
Acco13g0534 516 SUPERFAMILY WD40 repeat-like 221 515 IPR036322 GO:0005515
Acco13g0534 516 Coils Coil 86 162 - -
Acco13g0534 516 Pfam WD domain, G-beta repeat 453 474 IPR001680 GO:0005515
Acco13g0534 516 Pfam WD domain, G-beta repeat 224 260 IPR001680 GO:0005515
Acco13g0534 516 Pfam WD domain, G-beta repeat 480 515 IPR001680 GO:0005515
Acco13g0534 516 Pfam WD domain, G-beta repeat 308 345 IPR001680 GO:0005515
Acco13g0534 516 Pfam WD domain, G-beta repeat 361 386 IPR001680 GO:0005515
Acco13g0534 516 ProSitePatterns Trp-Asp (WD) repeats signature. 247 261 IPR019775 -
Acco13g0534 516 Gene3D - 91 164 - -
Acco13g0534 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 311 IPR001680 GO:0005515
Acco13g0534 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 395 IPR001680 GO:0005515
Acco13g0534 516 ProSitePatterns Trp-Asp (WD) repeats signature. 332 346 IPR019775 -
Acco13g0534 516 Gene3D - 216 359 IPR015943 GO:0005515
Acco13g0534 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 431 IPR001680 GO:0005515
Acco13g0534 516 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 264 - -
Acco13g0534 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 354 IPR001680 GO:0005515
Acco13g0534 516 Gene3D - 360 516 IPR015943 GO:0005515
Acco13g0534 516 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 484 516 - -
Acco13g0534 516 Coils Coil 51 78 - -
Acco13g0534 516 SMART WD40_4 431 474 IPR001680 GO:0005515
Acco13g0534 516 SMART WD40_4 305 345 IPR001680 GO:0005515
Acco13g0534 516 SMART WD40_4 348 386 IPR001680 GO:0005515
Acco13g0534 516 SMART WD40_4 263 302 IPR001680 GO:0005515
Acco13g0534 516 SMART WD40_4 477 516 IPR001680 GO:0005515
Acco13g0534 516 SMART WD40_4 221 260 IPR001680 GO:0005515
Acco13g0534 516 SMART WD40_4 389 428 IPR001680 GO:0005515
Acco13g0534 516 Pfam Autophagy protein 16 (ATG16) 49 175 IPR013923 -
Acco13g0534 516 CDD WD40 224 515 - -
Acco13g0534 516 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Acco13g0534 516 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Acco13g0534 516 PRINTS G protein beta WD-40 repeat signature 373 387 IPR020472 -
Acco13g0534 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 484 516 IPR001680 GO:0005515
Acco13g0534 516 ProSitePatterns Trp-Asp (WD) repeats signature. 373 387 IPR019775 -
Acco13g0534 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 269 IPR001680 GO:0005515
Acco13g0534 516 CDD Atg16_CCD 90 178 - -
Acco13g0534 516 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 346 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0534 366 511 U-box Gene Family AT1G04510 26.531 2.30e-06 48.1