Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0531 ATGACCACCTCTTTCCTCTCCCTGCTCTTCTTTCTCTCCTTTTTTATCTTCATAACCCTCATTTCCTCCAGACCCCTCCATGACCCAGAATTGGTAGTACAAGAAGTGAACGGGAAGATCAATGCTTCAATGGCGGCCAGGAGGAATTTGGGGTACCTATCCTGTGGTACGGGCAACCCCATTGACGATTGCTGGAGATGTGACTCTGACTGGGAGAAGAACCGGCAGAAGCTAGCCGATTGTGCAATTGGGTTCGGGAAGAATGCTGTTGGGGGCAAGGACGGTGACATTTACGTGGTGACGGACTCCGGGGACGACGACCCGGTGAACCCGAAGCCGGGGACTCTCCGGTACGCGGTGATCCAAGACGAGCCGTTGTGGATCACATTTGCAAGAGACATGGTGATCCAGCTGAAAGAAGAGCTTATAATGAACTCGTTCAAGACCATCGACGGTAGAGGAGCGAGCGTACATATTGCAGGGGGTCCATGCATTACGATCCAGTTCGTGACCAACATTATAATCCACGGCATTCACATCCATGACTGTAAGCAAGGAGGTAACACTATGGTGAGGGACTCCCCACGGCACTACGGGTGGAGGACGGTATCGGACGGTGACGGCGTGTCCATCTTCGGAGGGAGCCACGTGTGGGTCGACCATTGCTCCTTGTCGAACTGCAATGACGGTCTGATCGATGCGATTTACGGGTCCACCGCAATCACCATCTCCAACAATTATATGACCCACCATGACAAGGTCATGCTATTGGGTCACAGTGATTCCTATACAGAAGACAAGAACATGCAAGTCACTATAGCCTTTAATCATTTCGGAGAAGGCCTCGTTCAAAGAATGCCAAGGTGTAGGCATGGATATTTTCACGTGGTGAACAATGACTATACCCATTGGGAAATGTATGCCATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAAGGAAACAGATTTGTAGCACCCGATGACAGATTCAGCAAGGAGGTGACGAAGCATGAGGACGCGGCGGAGAGCGAGTGGCAGGGGTGGAATTGGAGGTCGGAAGGGGACTTGATGGTAAACGGTGCTTTTTTCACGGCGTCAGGGGCTGAAGCGTCGTCGAGCTATGCCAGGGCTTCAAGTCTAAGTGCGAGACCTTCTTCACTTGTGGGAACGATAACCGGAGGTGCCGGTGTACTTACCTGCCGGAAAGGTTCTAGTTGCTGA 1224 0.5188 MTTSFLSLLFFLSFFIFITLISSRPLHDPELVVQEVNGKINASMAARRNLGYLSCGTGNPIDDCWRCDSDWEKNRQKLADCAIGFGKNAVGGKDGDIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWITFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGIHIHDCKQGGNTMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIYGSTAITISNNYMTHHDKVMLLGHSDSYTEDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAAESEWQGWNWRSEGDLMVNGAFFTASGAEASSSYARASSLSARPSSLVGTITGGAGVLTCRKGSSC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0531 407 Gene3D - 58 400 IPR012334 -
Acco13g0531 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Acco13g0531 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Acco13g0531 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Acco13g0531 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Acco13g0531 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Acco13g0531 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Acco13g0531 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Acco13g0531 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Acco13g0531 407 SMART amb_all 133 330 IPR002022 -
Acco13g0531 407 FunFam Pectate lyase 58 400 - -
Acco13g0531 407 Pfam Pectate lyase 143 324 IPR002022 -
Acco13g0531 407 SUPERFAMILY Pectin lyase-like 48 402 IPR011050 -
Acco13g0531 407 PANTHER PECTATE LYASE 18-RELATED 27 405 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0531 Acco-ChrAcco13 3823740 3825273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0531 1 407 Polysaccharide Lyase AT5G63180 80.000 0.0 676
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g0531 13 3823740 3825273 Acco13g0531 13 3823740 3825273 ECH
Acco04g1882 04 31606809 31609716 Acco13g0531 13 3823740 3825273 ECH