Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0529 ATGGATCCCTCTGAATCAGATTCAACAGCTGTTTCGAACCCCATCAAAGATTCAGAATTGGGCGTTCATTCAGCTTCTTCTCTCGGGAGTGCTAATCATGATCCTGAACCGTCAGATCTCAATCCCAGGCATGAGACTGATCCCCTTCATGAAGACTTTCAGAACAAGTTGATTTTGAAGGATAAGGATGAGAGGGCCGAAGAGGAAAAGGAGAAGAAAGATTCAGAATTAGATGAAGCTAAAGAAGTAAGTGCTATAGCTGATACCGAAGAATCTGAGAAGGAACAATTTTTTGACGATGCTAACCAGAATTGGAACGGAAATGAGTACGATGGTTGGGGGGAGAATGTGAACGAGAGCGAGAATGATAATTTTGGTACAGATTATGTAACTGTCGGTGATGAAGTGGAGAAGAACGATGAGGAAAGTAGCGGGAGAGCACACCAGTACCCAGTGAGGCCAGAAGCTGAAGATTGTGCGTTCTATCTCAAGACTGGAACCTGCAAGTTTGGGTTCAACTGCAAGTTTAATCACCCTCTTAAGAGGAAAATCCAGGTTGTTAAGGAGAAAGGGAGAGACAGAGAAGAATCAGGGCAGACTGAATGCAAGTATTATCTAAAGTCAGGAGGTTGTAAATACGGAAATGCTTGTAAATTTAACCACACTAGAGGAAAATGTTCAGCAACCACAATTTTGGAACTTAACTTTCTTGGCCTGCCAATTCGTCTGGGAGAGAAAGAGTGCCCATATTATATGCGTACCGGATCTTGTAAGTTTGGCGCAAACTGCAAATTTAATCATCCTGATCCTACCATTGTTGGAGGAAGTGATACTCCAACATATGCTAATGGTGGGGCTGTTCCTTTTCAAGGCGTATCGCAGCCATCTATACCTTCTTGGTCCTCTCCAAGAACATTAAATGAAAGTGCTTCTTTTGTGCCAATGATGATTCCAACTGTTCAAGGGGTTTCTCCCCAAAGTTCTGATTGGAATGGATATCAGGCACCCGTCTACCTACCTGAGAGGACTCTGCACCCACCACCATCTACATACGTTGTGAACAATCCAGCTATTGAGACAAATGTCTATATGCCCCATCCAAAGCCGATGCAGGTCGATGAGTTTCCAGAAAGGCCTGGTGAACCAGAGTGCAGTTACTACCTAAAAACTGGGAATTGCAAATTTAAATTTAATTGTAGATTTCACCATCCAAAGAACCGTATTGCAAGACCACTATGCACCCTAAGTGACAAGGGTCTGCCTTTGAGACCTGACCAGGGTGTCTGCTCGCACTATAGTCGCTATGGAATATGCAAATATGGGCCATCATGTAAGTTTGATCACCCAACAGACCTAACGCCGTCAAATGTGCCAGGACCTGATCAGGAATCCTCCTACACAAACTCTGTTAGTGTTGAAGTGGCTGAGATGGTTGGAAGTGGGAGTGCAGGTGACTCTCCAATTAAGCAGCCTGTTTAA 1479 0.4402 MDPSESDSTAVSNPIKDSELGVHSASSLGSANHDPEPSDLNPRHETDPLHEDFQNKLILKDKDERAEEEKEKKDSELDEAKEVSAIADTEESEKEQFFDDANQNWNGNEYDGWGENVNESENDNFGTDYVTVGDEVEKNDEESSGRAHQYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPLKRKIQVVKEKGRDREESGQTECKYYLKSGGCKYGNACKFNHTRGKCSATTILELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTIVGGSDTPTYANGGAVPFQGVSQPSIPSWSSPRTLNESASFVPMMIPTVQGVSPQSSDWNGYQAPVYLPERTLHPPPSTYVVNNPAIETNVYMPHPKPMQVDEFPERPGEPECSYYLKTGNCKFKFNCRFHHPKNRIARPLCTLSDKGLPLRPDQGVCSHYSRYGICKYGPSCKFDHPTDLTPSNVPGPDQESSYTNSVSVEVAEMVGSGSAGDSPIKQPV 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0529 492 Gene3D - 344 419 - -
Acco13g0529 492 Gene3D - 422 471 - -
Acco13g0529 492 Coils Coil 59 83 - -
Acco13g0529 492 SUPERFAMILY CCCH zinc finger 421 449 IPR036855 GO:0046872
Acco13g0529 492 MobiDBLite consensus disorder prediction 1 96 - -
Acco13g0529 492 MobiDBLite consensus disorder prediction 1 34 - -
Acco13g0529 492 ProSiteProfiles Zinc finger C3H1-type profile. 242 270 IPR000571 GO:0046872
Acco13g0529 492 SUPERFAMILY CCCH zinc finger 200 225 IPR036855 GO:0046872
Acco13g0529 492 Gene3D - 188 272 - -
Acco13g0529 492 Gene3D - 119 187 - -
Acco13g0529 492 ProSiteProfiles Zinc finger C3H1-type profile. 153 181 IPR000571 GO:0046872
Acco13g0529 492 SMART c3hfinal6 242 269 IPR000571 GO:0046872
Acco13g0529 492 SMART c3hfinal6 425 450 IPR000571 GO:0046872
Acco13g0529 492 SMART c3hfinal6 196 223 IPR000571 GO:0046872
Acco13g0529 492 SMART c3hfinal6 153 180 IPR000571 GO:0046872
Acco13g0529 492 SMART c3hfinal6 378 405 IPR000571 GO:0046872
Acco13g0529 492 ProSiteProfiles Zinc finger C3H1-type profile. 378 406 IPR000571 GO:0046872
Acco13g0529 492 ProSiteProfiles Zinc finger C3H1-type profile. 196 224 IPR000571 GO:0046872
Acco13g0529 492 SUPERFAMILY CCCH zinc finger 152 181 IPR036855 GO:0046872
Acco13g0529 492 PANTHER PROTEIN PHOSPHATASE RELATED 48 460 - -
Acco13g0529 492 SUPERFAMILY CCCH zinc finger 243 270 IPR036855 GO:0046872
Acco13g0529 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 380 405 IPR000571 GO:0046872
Acco13g0529 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 428 449 IPR000571 GO:0046872
Acco13g0529 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 199 221 IPR000571 GO:0046872
Acco13g0529 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 245 268 IPR000571 GO:0046872
Acco13g0529 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 157 179 IPR000571 GO:0046872
Acco13g0529 492 ProSiteProfiles Zinc finger C3H1-type profile. 423 451 IPR000571 GO:0046872
Acco13g0529 492 SUPERFAMILY CCCH zinc finger 383 407 IPR036855 GO:0046872
Acco13g0529 492 MobiDBLite consensus disorder prediction 37 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0529 Acco-ChrAcco13 3799000 3802840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0529 150 452 C2H2 Transcription Factor Family AT3G02830 41.088 5.54e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco13g0529 zf-CCCH 1.5e-08 CL0537