Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0469 ATGGATTGGAATTTGAAGGGTGGGTCTTGGGATTTGAGTGAATTAGATGGAGGAGGTTTACCCAACATAGAAACAAGGGTTGACAATTATAATATGGGGTCAACCAGATTTGGATTGATGAAGGGAAGTGGAGGCGAATTTTGTTTTGATTTGAGGCTAGGTCAGGTTGCCAGTTCTTGGACTGAACCATCATCTGGGCCCAAGTGGAAAGCGGCCAAACCGGCGGCGACGTCAGGCGCTTCAGGATCATCGAAGAGAGCTCGAGCAATTAACAATGGGATCCAAACGGCGTCGTGTCTGGTGGATGGGTGCAGTTCAGATCTGAGTAACTGTAGAGAGTACCATAGGCGTCACAAGGTGTGTGAGCTTCATTCCAAGACTTCTGTGGTTACCATTGGAGGCCACAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAAGGGAAGAGAAGTTGCAGGAAGCGATTAGATGGTCACAACCGACGGAGAAGAAAGCCCCAGCCTGTTCCTCTCCCTCGTTCTGCTACTATATTCTCCAATTTCCACCAAGGGAGGCAGTTACTGCCCTTCTCATCAGACTCAAATCTATATCCTTCAAGTTCTACGGTGAACCCTGGTTGTGACTGGGAATGGGATGGTAGGACGATGGTTCATCATCATAATAATAATAACAAGCAGCAGCTATTTTTTGGGTCTTCTGAAAGCTCCGAACTTAAGCAGGAAATGACAGCATATCTTGAGAAGCCATGTATTGAAGCACTGAAGACGACGGCCACGGCGAGGTCTGACTCTTTCTCATTATCTCCACCTCCGCCTTGTGCTCTCTCTCTTCTGTCATCACCGCCGCGGGCACCTATGTACCTGTCATCGCAGCCTCTAGCCGCTTCCGCCCTCCATCATCATCACGGCCTACAAGAGGCTGTGGACACTACACTTCTGGTTAGCAATGGGAGTCATCAGCCTTCAATGTATAATTTGTTAGGGTCTGATACATCCCATACTAATAATTCTCAGTCACTTCCATTTCATTGGGAATAA 1059 0.4769 MDWNLKGGSWDLSELDGGGLPNIETRVDNYNMGSTRFGLMKGSGGEFCFDLRLGQVASSWTEPSSGPKWKAAKPAATSGASGSSKRARAINNGIQTASCLVDGCSSDLSNCREYHRRHKVCELHSKTSVVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPVPLPRSATIFSNFHQGRQLLPFSSDSNLYPSSSTVNPGCDWEWDGRTMVHHHNNNNKQQLFFGSSESSELKQEMTAYLEKPCIEALKTTATARSDSFSLSPPPPCALSLLSSPPRAPMYLSSQPLAASALHHHHGLQEAVDTTLLVSNGSHQPSMYNLLGSDTSHTNNSQSLPFHWE 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0469 352 SUPERFAMILY SBT domain 98 175 IPR036893 GO:0003677|GO:0005634
Acco13g0469 352 Gene3D - 90 160 IPR036893 GO:0003677|GO:0005634
Acco13g0469 352 ProSiteProfiles Zinc finger SBP-type profile. 96 173 IPR004333 GO:0003677
Acco13g0469 352 FunFam Squamosa promoter-binding-like protein 14 90 160 - -
Acco13g0469 352 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 344 IPR044817 GO:0003677
Acco13g0469 352 MobiDBLite consensus disorder prediction 331 352 - -
Acco13g0469 352 Pfam SBP domain 99 172 IPR004333 GO:0003677
Acco13g0469 352 MobiDBLite consensus disorder prediction 59 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0469 Acco-ChrAcco13 3397514 3399013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0469 1 212 SBP-box Gene Family AT5G50670 52.915 5.64e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Acco13g0469 SBP 2.8e-30 No_clan