Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0442 ATGCCCCAGAGGTGCATATCTGCCTCGTCTCACCTTTTTTATGACAATTCCTTTTTTCCTGAGAGGAGTGTTGGATTGCAGAAGCCAAAATCCTTTCATGACCATTATTTACAAGGGAAGATAGGATCATCACCGCGAAGCATTTCAAATACATCGTCATCTCTAGAAATGAGTGCAAGCTCTGGCTTGCCAATGTCACAAACAAGTCTGTCGGGAGAAGCTACGGAAAAGCTGCATGTTGCTGGAGGGGGCATCGTTGATGTGTTGAGGTCTACCAAGGAATCAATGAATCGTCACCCCAGATCATGGTCTAATGTGCACATGCAGCCAGAATCTGCATCTTATAGTTTAACTGGCAAAAAGATTCTCACTGATACCACTTCTCATGAGAGCAGCCTATTTTCTAGCTCACTGTCTGAGATATTTAGTAAAAAATTGAGGTTAACTCGGAATGATATCCTGTCGCGCCAGCCTGTAATCATTGGTTCATTTCCTGAGGAAGAACCATATAAATCTCTTGAAGAAATTGAGGCAGACACTATTGGGAATCTTCTTCCTGATGAAGATGATCTGTTTTCTGGTGTAACTGATGAGTTAGGATACACTGCCAATGCCAGAACAAATGATGACTTTGAGGAGTTTGACTTGTTTAGCAGTGGTGGAGGCTTGGAACTTGAAGGTGATGAAAATCTAAGTATGGGAAAGAAAATCAGTTGTCTGGATGTAGATTCTGGTTATTTTGGAGGTTTTAAAGGAAAACTTCCGTTTGGCGAACAACCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTTGAAGATTCTGAGCTAAAGGCTCTTTTTGAGCAATATGGAGAAATCCGAACCATTTATACAGCCTGCAAGCATCGTGGGTTTGTGATGATTTCTTACTATGACCTAAGGGCAGCACAAAATGCAATGCAAGCCCTTCAGAATAGGTCGTTAAGGTCTAGAAAACTTGACATCCATTATTCAATTCCAAAGGGCAATGCTCCTGAGAGGGATATAAGCCATGGTACACTAGTGCTATCTGGTCTTGATTCATCTGTTTCAAATGATGAGCTTCAGCATATTTTTGGATTTTATGGAGAAATAAAAGAAATCTATGAATCTCCAGAATTAAATTATAAAAAAATCATTGAATTTTATGATGCACGAGCTGCAGAAGCTGCTCTTCGTGCATTAAACAGGAGTGACATTGCTGGCAAGCAGATCAAGCTTGAACCTGGCTATCCTCGGGGAACAACATGTCTGACGAATGAATGTCACAATAGCCAAGATGAACCTGATTTTGGTCAAGGTCTCTGTGACAACTTATCCCTAAGACACAAAGCAACGATGTCTTCTGGAGTAATTGCATCTGGCTGCTTAGAAAATGGACCTAATCCAGGATTTCGCTCTGCAATACAGCAACCTGTTAATGCATTAGTTGATAATGCTTTCTCTCCTGTAAATTCGAGCATCCACAAATCAGTGAGAGGGCCAACATCTGGAAAAATGCCCAGCCTCGATGCAATGAAATTTTCCCCTGTTCCAAGATTTCATCCTCATTCCCTCCCTGATTATAATGATAGCTTTGCTAGTGGTAGTGCTTACAACTTTTCAAGCATTGTTGGCAATGTGGCTGGCAACATTGGTACTGCAGTGACAGACAGCTCAGATAGCAGGCACGACCAGGGAATAGGTTCAACTGGGAATCTGATGGAATTTACTGGAGCAGGAAATGGTAACCATAAACGTCATGGGCTTTATCATATGTGGAACAACTCCAATTTGCATCAGGAACCTTCACCAAATCCCATGCTTTGGCAGAAAACATCATCATTTCTTAACGGTGCTTGTGCTCCTGGCCTTCCACAAATGCCTGGCTTTCCTAGAACACAGACTCACATGCTGAGAGCATCACATATGGACCATCATGTTGGGTCAGCTCCTGTTAATGCCTCGCCCTGGGACAGGCAGCAGGCTTATTTGGGAGTATCTCCTGAAACTTCTGGTTTTCGTATGGGTTCTCTCGGAAGTGCTGGTTTACCTGGTAACTGGCAAATGCATCCTCCAGAATTTACGTCTCACAACATGTTCCCTCATATTGGTGGGAATGGTGCAGAATTGACACAAACTGCTGGGCAAAACTCTCCCAATCAGTTTTCACATGTTTTCCCTGGGAGACATCCCATGACTTTGTCCAAACTTGATCCCAATGAACGAATGAGGAATCTGTATCCCCTCCGGAAAAGTGAAGCTAACGCTAATAATGCTGATAAAAAGCAATATGAACTTGACCTAGGCAGCATAATGCGTGGGGAAGACAACCGAACAACTCTCATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTAGCTGCTATAGATGAGCAATGCCGGGGAACTTATGATTTTCTATATTTGCCTATTGACTTTAAGAACAAATGTAACGTTGGCTATGCATTTATTAATATGATTGATCCTGCTCAGATTATTCCATTCCACCAGGCTTTTAATGGGAAGAAATGGGAGAAATTTAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAGGGTAAAACCGCACTTATTGCTCACTTCCAGAATTCAAGCCTGATGAATGAAGACAAGCGTTGCCGTCCTATTCTGTTCCACACAGATGGCCCAAATGCTGGTGATCCGGAGCCCTTCCCCATGGGTACTAACATTAGGATGAGGCCTGGGAAATCTCGCAGCAGTGGCAATAGCGAGGAGAATCGCAGCCAGGGGAGTCCTTCAACTTTGGCAAGCGGAGAGGGATCTAATACTAATGTGATAGATTCTTCCTTGAGCTCTTTGCGGGATTCTGACTGA 2877 0.4261 MPQRCISASSHLFYDNSFFPERSVGLQKPKSFHDHYLQGKIGSSPRSISNTSSSLEMSASSGLPMSQTSLSGEATEKLHVAGGGIVDVLRSTKESMNRHPRSWSNVHMQPESASYSLTGKKILTDTTSHESSLFSSSLSEIFSKKLRLTRNDILSRQPVIIGSFPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVTDELGYTANARTNDDFEEFDLFSSGGGLELEGDENLSMGKKISCLDVDSGYFGGFKGKLPFGEQPSRTLFVRNINSNVEDSELKALFEQYGEIRTIYTACKHRGFVMISYYDLRAAQNAMQALQNRSLRSRKLDIHYSIPKGNAPERDISHGTLVLSGLDSSVSNDELQHIFGFYGEIKEIYESPELNYKKIIEFYDARAAEAALRALNRSDIAGKQIKLEPGYPRGTTCLTNECHNSQDEPDFGQGLCDNLSLRHKATMSSGVIASGCLENGPNPGFRSAIQQPVNALVDNAFSPVNSSIHKSVRGPTSGKMPSLDAMKFSPVPRFHPHSLPDYNDSFASGSAYNFSSIVGNVAGNIGTAVTDSSDSRHDQGIGSTGNLMEFTGAGNGNHKRHGLYHMWNNSNLHQEPSPNPMLWQKTSSFLNGACAPGLPQMPGFPRTQTHMLRASHMDHHVGSAPVNASPWDRQQAYLGVSPETSGFRMGSLGSAGLPGNWQMHPPEFTSHNMFPHIGGNGAELTQTAGQNSPNQFSHVFPGRHPMTLSKLDPNERMRNLYPLRKSEANANNADKKQYELDLGSIMRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRMRPGKSRSSGNSEENRSQGSPSTLASGEGSNTNVIDSSLSSLRDSD 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0442 958 CDD RRM3_MEI2_like 783 868 IPR034454 -
Acco13g0442 958 CDD RRM1_MEI2_like 261 336 IPR034453 -
Acco13g0442 958 SUPERFAMILY RNA-binding domain, RBD 782 866 IPR035979 GO:0003676
Acco13g0442 958 Pfam RNA recognition motif 2 780 876 IPR007201 -
Acco13g0442 958 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 420 IPR000504 GO:0003723
Acco13g0442 958 FunFam MEI2-like protein 5 isoform 2 251 345 - -
Acco13g0442 958 SMART rrm1_1 263 331 IPR000504 GO:0003723
Acco13g0442 958 SMART rrm1_1 782 858 IPR000504 GO:0003723
Acco13g0442 958 SMART rrm1_1 348 416 IPR000504 GO:0003723
Acco13g0442 958 MobiDBLite consensus disorder prediction 914 958 - -
Acco13g0442 958 MobiDBLite consensus disorder prediction 891 958 - -
Acco13g0442 958 MobiDBLite consensus disorder prediction 42 68 - -
Acco13g0442 958 Gene3D - 345 439 IPR012677 -
Acco13g0442 958 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 328 IPR000504 GO:0003723
Acco13g0442 958 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 349 414 IPR000504 GO:0003723
Acco13g0442 958 SUPERFAMILY RNA-binding domain, RBD 259 421 IPR035979 GO:0003676
Acco13g0442 958 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 335 IPR000504 GO:0003723
Acco13g0442 958 FunFam Protein MEI2-like 1 346 440 - -
Acco13g0442 958 MobiDBLite consensus disorder prediction 38 68 - -
Acco13g0442 958 Gene3D - 256 344 IPR012677 -
Acco13g0442 958 PANTHER RNA RECOGNITION MOTIF-CONTAINING 67 933 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0442 Acco-ChrAcco13 3166288 3172034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0442 257 373 Eukaryotic Initiation Factors Gene Family AT3G16380 26.866 1.66e-07 53.1