Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0428 ATGGCAGCGTTTCCATTCCAATTCCACCCTTTCCTTGTTGACTCTCCATTTTCCTCTGGTGCTCCCATTAAGATGACAGCTTTCACTGAGCAGCAACAGCCTCCTCAGTTTCACGAATTATCTTTAGAGAATTGCTTCGTTGTTGATCAAAGCTCCAAGTTTAACATGAGTGATAATGAGCCTTCTTCTGTGACTAAAAACCAGAGTCCTGAGACCTCTTTGGTATTGGATAAGCTTGAACCTGATGGTGAGCAGGTCACTCAGAAGGTGACTCCTGTAGAGAAGAAGAAGAGAAACAGGATTAATCGTCCTTCTTCCTTGATTCGTCCGCAATCCAAGGAATCTAAAGGAGCAAGAAACAAGAGACAAAAGAAGAGCAATGATGGTGAGTTGAAGGAAGGAGATAAGTCAAAAGATGAGAAGAAGAATCAGAAGAAGAGTCACGAAGAACCTCCAACAGGTTATATCCATGTAAGAGCAAGAAGGGGTCAGGCAACTGATAGCCATAGCCTAGCTGAAAGGGCAAGAAGAGAGAAGATAAGTGAGAGGATGAAGATGTTGCAGCGACTTGTGCCAGGTTGTGACAAGGTGACTGGAAAAGCCCTCATGTTGGATGAAATAATCAATTATGTTCAGTCTCTACAAAATCAAGTGGAGTTTTTGTCAATGAAACTTGCTTCTGTGAATCCCATGTTATATGACTTCACAATGGACATTGACTCTCTCATGGTCAGACCAGAGAAATCAAATTGCATACCATCACCACTTCCATCTGTGCAGCCCAGCAGCCTCAACCAGGCCACAACTTTTGCCGATACAACCACCGTTACCGCCACGGCCGCCGCCGGCTTTCCCACTGCTAATGACTATCCTTTGGACAATTCAGCTTCTTTTTTCCTTCAAGGACAGAGGTCTAATGTCTTATCTGAGCCCAGCAGCCTCAACCAGGCCACAACTTTTGCCGATACAACCACCGTTACCGCCACAACCACCGCCGGCTTTCCCACTGCTAATGACTATCCTTTGGACAATTCAGCTTCTTTTTACCTTCAAGGACAGAGATCTAATGTCTTATCTGAGGACACAGCTAGTCAATTCTGGGGCATAGAAGACCCACGCCAAAAGTTTCTTCATCCATATGGGATCAACAGCAACAGCTTATGTTTCTTTCATTAA 1176 0.4456 MAAFPFQFHPFLVDSPFSSGAPIKMTAFTEQQQPPQFHELSLENCFVVDQSSKFNMSDNEPSSVTKNQSPETSLVLDKLEPDGEQVTQKVTPVEKKKRNRINRPSSLIRPQSKESKGARNKRQKKSNDGELKEGDKSKDEKKNQKKSHEEPPTGYIHVRARRGQATDSHSLAERARREKISERMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMLYDFTMDIDSLMVRPEKSNCIPSPLPSVQPSSLNQATTFADTTTVTATAAAGFPTANDYPLDNSASFFLQGQRSNVLSEPSSLNQATTFADTTTVTATTTAGFPTANDYPLDNSASFYLQGQRSNVLSEDTASQFWGIEDPRQKFLHPYGINSNSLCFFH 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0428 391 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 49 271 IPR024097 GO:0006355
Acco13g0428 391 MobiDBLite consensus disorder prediction 114 176 - -
Acco13g0428 391 MobiDBLite consensus disorder prediction 53 74 - -
Acco13g0428 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 231 IPR036638 GO:0046983
Acco13g0428 391 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983
Acco13g0428 391 CDD bHLH_AtBPE_like 154 239 - -
Acco13g0428 391 Gene3D - 161 234 IPR036638 GO:0046983
Acco13g0428 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983
Acco13g0428 391 MobiDBLite consensus disorder prediction 53 176 - -
Acco13g0428 391 FunFam Basic helix-loop-helix transcription factor 161 234 - -
Acco13g0428 391 SMART finulus 170 220 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0428 Acco-ChrAcco13 3029392 3031424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0428 119 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 61.486 2.54e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco13g0428 HLH 1.2e-06 No_clan