Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0421 ATGGGTTGCGTGCTCGGAGCGGTGAGGGATGATGCAGACCTTGGGGCGGTCTCCGGAGCTCAGAACCGTCGTGAGCAAAACTCTGCTGCCGACGGAGGTAATGCTGTTAGCGTTGCGAAACGAGGGAAGGTGAAGGAGAAGCAAAGGACTCAGCAGCATGGCAGCGAATTTGTTTATAATCTCCCGGGACCGGAACGCCAGAAACCTTGTCTTGATCCATACTCTCAAACTCCTCAGGGGTGGCCATCTTGGTTGATGGCTGTGGCTGGCGACGCTATCCGGGATTGGACTCCCCGGCGCGCCAACACGTTCGAGAAACTTGCGAAGATTGGACAAGGGACGTATAGCAATGTATATAAAGCGAGAGACCTTCTTACCGGAAAGATAGTAGCTTTAAAGAAAGTTAGGTTTGATAATCTGGAGCCAGAGAGTGTGAAGTTCATGGCCAGAGAGATCCTTGTTTTGAGGCGGCTTGACCACCCAAACATCGTGAAACTCGAGGGCTTGGTTACTTCTAGAATGTCGAGCAGTCTTTACTTAATATTCGAGTATATGGAACACGATCTTGCTGGGCTTACTGCTGGGCAAGGTGTTAAGTTCACTGAGCCTCAAGTTAAATGTTATATGATGCAATTACTCTCTGGCCTTGAGCATTGCCACAGCAAAGGTGTCTTGCATCGTGATATCAAGGGTTCCAATCTGCTTATTGATGATGAAGGAATCCTTAAAATTGCAGATTTTGGACTGGCAACTTTGTATGATCCTGAGCACAAGCAACCCTTGACAAGTACAGTTGTCACACTTTGGTATCGTGCTCCCGAGCTTCTTCTTGGAGTTACACATTATGGTGTTGGCATTGACCTCTGGAGTGCTGGCTGCATCTTGGCAGAGCTGCTTATTGGGAAGCCAATCATGCCTGGCCGAACAGAGGTTGAACAACTGCACAAAATATTTAAATTATGTGGTTCTCCATCTGATGATTACTGGAAGAAATATAAATTGCCAAATGCTACACTCTTTAAGCCACAGCAGACATATAAAAGATGCATTTTAGAAACCTTCAAGGATTTCCCTCCTTCTTCCGTACATCTAATATGTACTCTTCTTTCAATAGATCCTGATGATCGTGCCACTGCCCTGGCTGCTCTAAGTAGTGATTTTTTTACCACTGAGCCCTATGCTTGTGAACCATCAAGTTTGCCAAAGTATCCTCCCAGCAAAGAACTGGATATAAAACTGAGAGATGAAGAAGCTAGAAGGCGAAAAGCTCTAAATGGCAAAACTAATGCAGTTGATAGTGCCAAAAGAGTCCGAGTACGTGAGCGTGGACAGGCCATGCCTGCCCCTGAAGCCAATGCAGAGATCCAATCAAACTTGGATAGGTTGAGAGTTGTGACACATGCAAATGCAAAAAGCAAGAGTGAGAAATTCCCGCCACCTCATCAAGACGGCACCGTTGGATATCCATTGGATGCATCTCACAAGGGACCTGTTTCATTTGGTGCCACTGATGCTTCCTTTAGCTCCGAAGTATTTAATTCAAAACCTGCAGGATCTGTTGAAAGCCATGCTGCTTTAGGACCTTACAGAGGTAAGAAAAAGAAAACAGATTCTTCATCATGGAAATTGATGCGTCCATTCAAGTAA 1647 0.4578 MGCVLGAVRDDADLGAVSGAQNRREQNSAADGGNAVSVAKRGKVKEKQRTQQHGSEFVYNLPGPERQKPCLDPYSQTPQGWPSWLMAVAGDAIRDWTPRRANTFEKLAKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNIVKLEGLVTSRMSSSLYLIFEYMEHDLAGLTAGQGVKFTEPQVKCYMMQLLSGLEHCHSKGVLHRDIKGSNLLIDDEGILKIADFGLATLYDPEHKQPLTSTVVTLWYRAPELLLGVTHYGVGIDLWSAGCILAELLIGKPIMPGRTEVEQLHKIFKLCGSPSDDYWKKYKLPNATLFKPQQTYKRCILETFKDFPPSSVHLICTLLSIDPDDRATALAALSSDFFTTEPYACEPSSLPKYPPSKELDIKLRDEEARRRKALNGKTNAVDSAKRVRVRERGQAMPAPEANAEIQSNLDRLRVVTHANAKSKSEKFPPPHQDGTVGYPLDASHKGPVSFGATDASFSSEVFNSKPAGSVESHAALGPYRGKKKKTDSSSWKLMRPFK 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0421 548 SMART serkin_6 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0421 548 FunFam probable serine/threonine-protein kinase At1g54610 91 186 - -
Acco13g0421 548 MobiDBLite consensus disorder prediction 512 548 - -
Acco13g0421 548 PANTHER CELL DIVISION PROTEIN KINASE 102 392 - -
Acco13g0421 548 MobiDBLite consensus disorder prediction 527 541 - -
Acco13g0421 548 CDD STKc_CDK9_like 104 388 - -
Acco13g0421 548 Gene3D Phosphorylase Kinase; domain 1 90 186 - -
Acco13g0421 548 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Acco13g0421 548 Gene3D Transferase(Phosphotransferase) domain 1 187 428 - -
Acco13g0421 548 Pfam Protein kinase domain 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0421 548 MobiDBLite consensus disorder prediction 468 492 - -
Acco13g0421 548 ProSiteProfiles Protein kinase domain profile. 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0421 548 FunFam probable serine/threonine-protein kinase At1g54610 187 428 - -
Acco13g0421 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Acco13g0421 548 SUPERFAMILY Protein kinase-like (PK-like) 97 393 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0421 Acco-ChrAcco13 2971264 2975005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0421 96 450 Core Cell Cycle Gene Families AT5G10270 46.684 3.17e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Acco13g0421 Pkinase 6.1e-69 CL0016