Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0394 ATGAAGAAAGCAAGCACAGTCACTTTTCCTTCAAAACCCTTATGGGTTCTTCCCTATCGAACCCAAAACCTCTCTGACCTTTACACATTGGGAAGGAAATTGGGTCAGGGTCAATTTGGAACCACCTATCTCTGCACAGAGAAGTCCACTGGTCGTACATATGCCTGCAAGTCAATCCCTAAGCGGAAGCTAATCTGCCAAGAGGATTACGACGACGTTTGGAGGGAGATTCAGATCATGCACCATTTGTCCGAGAATCCCAACGTTGTTAGAATCCATGGCACTTACGAGGACTTATCCTCTGTTCACTTGGTCATGGAGCTCTGCGAAGGCGGAGAGTTGTTTGACCGGATAGTGAAGAAAGGGCATTACAGTGAGAGGCAAGCGGCTTCGCTGATCAAGACCATTGTTGAGGTTGTCCAAGCTTGTCACTCTCTTGGAGTCATGCATAGAGACCTCAAGCCAGAAAACTTCTTATTCGATAGCGTCGAAGAGGATGCCAAGCTTAAAGCCACTGATTTCGGACTGTCTGTTTTCTACAAGCCAGGTGAAACTTTTTCTGATGTTGTTGGGAGCCCATACTATGTTGCACCAGAGGTGTTACGCAAGCATTATGGACCCGAGTCAGATGTGTGGAGTGCTGGTGTTATTTTATACATCTTATTAAGTGGGGTGCCACCTTTTTGGGCTGAAAGTGAAATAGGGATCTTCCGACAGATTTTACAAGGTAAACTTGATTTTCAGTCAGAACCATGGCCTAACATCTCAGAGAGTGCCAAGGATCTAATTAGAAAAATGCTTGTTCAAAATCCGAAAAAGAGGCTTACAGCCCATGAAGTACTCAGCCACCCATGGATTGTTGATGACAACATCGCACCTGATAAACCCCTGGACTCTGCTGTTTTATCACGCCTGAAACAGTTCTCTGCAATGAATAAGCTTAAAAAGATGGCTTTACGTGTTATTGCTGAGAGGCTCTCTGAGGAAGAAATTGGCGGACTGAAGGAGTTATTCAAGATGATTGACACAGACAACAGTGGAACCATAACTTTTGATGAGTTAAAAGAAGGTTTAAAGCGGGTGGGGTCTGAACTAATGGAGTCTGAAATCAGAGATCTCATGGAAGCGGCTGATATTGATAATAGTGGAACAATTGACTATGGTGAATTCATTGCTGCGACTATCCACCTAAATAAGCTAGAGAGAGAGGAAAATCTGTTGTCTGCCTTCTCATATTTTGATAAAGATGGTAGTGGTTACATAACCATTGATGAGATTCAACAAGCCTGTAAGGAATTTGGTTTAGGAGATGCTCATATTGATGAAATGATCAAAGAAATTGATCAAGACAATGATGGACAAATAGATTATGCGGAATTTACTGCAATGATGAGGATGGGCAATGGAGGGATTGGAAGGCGAACCATGAGAAACACACTAAATTTAAGGGATGCTCTGGGATTGATAGGCACTGGCTCTGATGACATTATGAGTGGTTAG 1500 0.432 MKKASTVTFPSKPLWVLPYRTQNLSDLYTLGRKLGQGQFGTTYLCTEKSTGRTYACKSIPKRKLICQEDYDDVWREIQIMHHLSENPNVVRIHGTYEDLSSVHLVMELCEGGELFDRIVKKGHYSERQAASLIKTIVEVVQACHSLGVMHRDLKPENFLFDSVEEDAKLKATDFGLSVFYKPGETFSDVVGSPYYVAPEVLRKHYGPESDVWSAGVILYILLSGVPPFWAESEIGIFRQILQGKLDFQSEPWPNISESAKDLIRKMLVQNPKKRLTAHEVLSHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFDELKEGLKRVGSELMESEIRDLMEAADIDNSGTIDYGEFIAATIHLNKLEREENLLSAFSYFDKDGSGYITIDEIQQACKEFGLGDAHIDEMIKEIDQDNDGQIDYAEFTAMMRMGNGGIGRRTMRNTLNLRDALGLIGTGSDDIMSG 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0394 499 FunFam Calcium-dependent protein kinase SK5 399 494 - -
Acco13g0394 499 Pfam Protein kinase domain 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0394 499 FunFam Calcium-dependent protein kinase SK5 114 298 - -
Acco13g0394 499 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 460 - -
Acco13g0394 499 SMART efh_1 369 397 IPR002048 GO:0005509
Acco13g0394 499 SMART efh_1 439 467 IPR002048 GO:0005509
Acco13g0394 499 SMART efh_1 333 361 IPR002048 GO:0005509
Acco13g0394 499 SMART efh_1 405 433 IPR002048 GO:0005509
Acco13g0394 499 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0394 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Acco13g0394 499 Gene3D Phosphorylase Kinase; domain 1 30 114 - -
Acco13g0394 499 ProSiteProfiles EF-hand calcium-binding domain profile. 329 364 IPR002048 GO:0005509
Acco13g0394 499 FunFam calcium-dependent protein kinase SK5 323 395 - -
Acco13g0394 499 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Acco13g0394 499 FunFam Calcium-dependent protein kinase 1 30 113 - -
Acco13g0394 499 ProSitePatterns EF-hand calcium-binding domain. 342 354 IPR018247 -
Acco13g0394 499 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Acco13g0394 499 SUPERFAMILY Protein kinase-like (PK-like) 13 305 IPR011009 -
Acco13g0394 499 ProSiteProfiles EF-hand calcium-binding domain profile. 437 470 IPR002048 GO:0005509
Acco13g0394 499 Gene3D - 399 497 - -
Acco13g0394 499 CDD STKc_CAMK 28 285 - -
Acco13g0394 499 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Acco13g0394 499 CDD EFh 406 465 IPR002048 GO:0005509
Acco13g0394 499 Gene3D Transferase(Phosphotransferase) domain 1 115 326 - -
Acco13g0394 499 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Acco13g0394 499 SUPERFAMILY EF-hand 325 465 IPR011992 -
Acco13g0394 499 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Acco13g0394 499 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0394 499 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Acco13g0394 499 Pfam EF-hand domain pair 404 465 IPR002048 GO:0005509
Acco13g0394 499 Pfam EF-hand domain pair 334 394 IPR002048 GO:0005509
Acco13g0394 499 CDD EFh 334 393 IPR002048 GO:0005509
Acco13g0394 499 Gene3D - 327 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0394 Acco-ChrAcco13 2814464 2817824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0394 16 495 EF-hand Containing Proteins AT1G35670 79.461 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Acco13g0394 Pkinase 1e-77 CL0016