Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0352 ATGGCGGTTGATGATGATTGCTTCGACCTTCACGATCTTGAGTCAGGGGACTTAGTTTTTCCGGACTTTGATGATGAATTTTCAGAGAGCCAATTCTGGGTTCCTCTGCCTCCTGATTCGTTTGAAGACTTGACATCATTGGAAGACTTGCCCTGTGAATGGTTCTCCGCATTGTCTGATGATTTTTTAACTTCAAACCAAATTGTCAGTGACCAGCCTCGTACGCCTGGAAGTGTGGAGAGAATGAGGGAAAAGACAAATGGAACTGTTAACGACGATTGGATTGGGATCTCTGAAGATGCAGTAAGTGGTTTTGCGAAGAAGAAGTGTAGGACGATGAAGGCGAAGGCGAGACGAAGCGCGGTTGTGATTGAAAGAAAGCGGTGCAGCCATTGCAAGACGGAGGAGACGCCGCAGTGGAGGAGTGGGCCCGGTGGGCCCAAGACACTGTGTAATGCCTGCGGTGTGAGGTTCAAGTCCGGAAGGCTGCTGCCGGAGTATCGTCCGGCAGCCAGTCCTACTTTTGATGAAGACAGGCATTCTAATTGCCATCGGATAATAATGGAAAAGCTACGATGGAATTGTTGA 588 0.4881 MAVDDDCFDLHDLESGDLVFPDFDDEFSESQFWVPLPPDSFEDLTSLEDLPCEWFSALSDDFLTSNQIVSDQPRTPGSVERMREKTNGTVNDDWIGISEDAVSGFAKKKCRTMKAKARRSAVVIERKRCSHCKTEETPQWRSGPGGPKTLCNACGVRFKSGRLLPEYRPAASPTFDEDRHSNCHRIIMEKLRWNC 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0352 195 PANTHER GATA TRANSCRIPTION FACTOR 115 189 - -
Acco13g0352 195 Gene3D - 124 186 IPR013088 GO:0006355|GO:0008270
Acco13g0352 195 SMART GATA_3 123 173 IPR000679 GO:0006355|GO:0043565
Acco13g0352 195 ProSiteProfiles GATA-type zinc finger domain profile. 123 159 IPR000679 GO:0006355|GO:0043565
Acco13g0352 195 CDD ZnF_GATA 128 177 IPR000679 GO:0006355|GO:0043565
Acco13g0352 195 ProSitePatterns GATA-type zinc finger domain. 129 154 IPR000679 GO:0006355|GO:0043565
Acco13g0352 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 127 177 - -
Acco13g0352 195 Pfam GATA zinc finger 129 163 IPR000679 GO:0006355|GO:0043565
Acco13g0352 195 FunFam GATA transcription factor 123 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0352 Acco-ChrAcco13 2494457 2495044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0352 47 189 C2C2-Gata Transcription Factor Family AT4G36240 46.584 2.52e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco13g0352 GATA 1.1e-16 CL0167