Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0347 ATGGACGATGAGAGCTACAACAATTTGACAAATGGGGTCATTTCAGAAAGCCCTGAAAGTCCTTCCTTAAAGACATCAAGCAATAACAATAATAATAGTAGCAGCAGCAGCACAAACAACAAAGAACAAGATCGGTTTCTGCCAATAGCCAATGTGGGGAGAATCATGAAGAAAGTGATGCCTCCGAATGGGAAAATCTCAAAGGACGCCAAAGAGACAGTTCAAGAATGTGTATCAGAGTTCATCAGCTTCATCACCGGAGAAGCCTCTGATAAATGCCAGAAAGAGAAGAGGAAGACCATCAATGGAGATGATATTATATGGGCCATTTCAATCCTAGGTTTTGATGATTACGTGGACCCTTTGAAATGTTACCTTCAAAAGTATAGAGACATTGAAGGAGAGAAGCTTAATCTTCCAAAACAACAACGTTCTGAACAAAGGCTCCACCACCACCACCACCAAGACCAAACTAATAATAATAATAATAATAATAATTTGCCTTTAAGTAGAGTATATTCTTCCACAAACCTAATTTCTCATCAGCCTCCCTACGTTCCTTCTGGCCAACCATATACTCTACCTTTCTCCCCAAATTCTATCAAACAGGACCAGATTGATTCGGGGGGACACTGGTAA 639 0.4022 MDDESYNNLTNGVISESPESPSLKTSSNNNNNSSSSSTNNKEQDRFLPIANVGRIMKKVMPPNGKISKDAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDIIWAISILGFDDYVDPLKCYLQKYRDIEGEKLNLPKQQRSEQRLHHHHHQDQTNNNNNNNNLPLSRVYSSTNLISHQPPYVPSGQPYTLPFSPNSIKQDQIDSGGHW 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0347 212 ProSitePatterns NF-YB/HAP3 subunit signature. 77 93 IPR003956 GO:0005634|GO:0006355|GO:0043565
Acco13g0347 212 SUPERFAMILY Histone-fold 43 160 IPR009072 GO:0046982
Acco13g0347 212 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 46 110 IPR003958 -
Acco13g0347 212 MobiDBLite consensus disorder prediction 141 212 - -
Acco13g0347 212 MobiDBLite consensus disorder prediction 158 206 - -
Acco13g0347 212 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 24 165 IPR027113 GO:0001228|GO:0006355|GO:0016602
Acco13g0347 212 MobiDBLite consensus disorder prediction 1 45 - -
Acco13g0347 212 FunFam Nuclear transcription factor Y subunit B-3 35 161 - -
Acco13g0347 212 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Acco13g0347 212 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Acco13g0347 212 PRINTS CCAAT-binding transcription factor subunit A signature 112 130 - -
Acco13g0347 212 MobiDBLite consensus disorder prediction 1 46 - -
Acco13g0347 212 Gene3D Histone, subunit A 35 172 IPR009072 GO:0046982
Acco13g0347 212 MobiDBLite consensus disorder prediction 141 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0347 Acco-ChrAcco13 2431633 2432271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0347 12 203 CCAAT-HAP3 Transcription Factor Family AT2G13570 60.396 2.07e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Acco13g0347 CBFD_NFYB_HMF 1.1e-27 CL0012