LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco13g0337	ATGAACGAAGCTGAAATGACGATTCCTCACTTGTTCAGATGCCCAATAAGTCTAGACTTGTTTGAGGATCCAGTGACTTTGTGTACAGGCCAAACCTATGATAGGTCCTGCATAGAAAGATGGCTTGCTCAAGGTAATCTCACTTGCCCTGTTACAATGCAGAAGCTTCATGATCTATCTATCGTCCCCAATCACACTCTTCGTCATTTGATCGATCAGTGGCTTCAATTTTACCCTCAATTTGACCACTTTGGTGACTCTAAAACCATAGATTCTCTTGCCTCTCTGAAACGCACCCTTCAATCTCAGGAATCTTCCTTCCAGAACAAACTCCTAGCTCTTGAAAAGATCAGCCTTTTATCTGATGAGTATTGCTCTTTCAAGAAATCTTACTTCCTTCAATTGGGTTTCTTGCCTCTTCTTTTGGGACTAGTTTTTGGAGCTCAAATATTCGAAGAGCATCATCGCCACATGGAGCTCATAGAGCTAGCTCTTTCTTGCATTATAAAGTTGTTACCCCTTGACACTACCTCGCAGCCTCTAAATATGCTCAAACAAGAACCTAACTTTGAATCGTATCTTGTATTATTCGAAAAGGGCAGTCCCAATATTAAAACCAGTCTGTGTAATCTGATAGATTCAGCAGCAACAGCACACGTAGAAGAGGTATTGCTTATGCTTGGAAATTCCCAGAAACTACTCAATGAAATTGTTCATTTTGCGAGCCAAAATAACTGTGTGGCTTCCAGGGCAGCAATAAAAGCCATATCAGCTCTGTGTTCCTTGCAATCAAACAGAGAGAATCTGGTAATAGCAGGGACAATAAATGGAATCATGAGGTACATTTCAGGATGTGAAACAAGAGAGAAGAACTTAGCTCCATTGGGGATGCAGATAATAGAGAAACTTCTGGTAATAGAGAGAGGCAAAGAAGCATTGGTGAATAGCCCAAATGGGATTCAAACTTTGGTGAAGATGGTGTTCAGAGTGAGTAATCATGAGTGTAGTGAGAACGCTGTGGGGTTACTAATAATGGTGTGCAGAGAAAGTGGACGAGCCAGAGAGGAGGCCATTGAAGGAGGAGTTTTGACTCAGTTGCTTTTGCTTCTGCAGAGTCAATGTAGTGCCAAGACGAAGACGAGGGCAAGAATTCTTCTCAAATTGCTAAGATCCAAGTGGGCTGAGAATGTACCAAAACAGGCCTGA	1206	0.4196	MNEAEMTIPHLFRCPISLDLFEDPVTLCTGQTYDRSCIERWLAQGNLTCPVTMQKLHDLSIVPNHTLRHLIDQWLQFYPQFDHFGDSKTIDSLASLKRTLQSQESSFQNKLLALEKISLLSDEYCSFKKSYFLQLGFLPLLLGLVFGAQIFEEHHRHMELIELALSCIIKLLPLDTTSQPLNMLKQEPNFESYLVLFEKGSPNIKTSLCNLIDSAATAHVEEVLLMLGNSQKLLNEIVHFASQNNCVASRAAIKAISALCSLQSNRENLVIAGTINGIMRYISGCETREKNLAPLGMQIIEKLLVIERGKEALVNSPNGIQTLVKMVFRVSNHECSENAVGLLIMVCRESGRAREEAIEGGVLTQLLLLLQSQCSAKTKTRARILLKLLRSKWAENVPKQA	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco13g0337	401	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	7	78	IPR013083	-
	Acco13g0337	401	FunFam	RING-type E3 ubiquitin transferase	8	79	-	-
	Acco13g0337	401	SUPERFAMILY	RING/U-box	3	76	-	-
	Acco13g0337	401	PANTHER	WDSAM1 PROTEIN	5	395	IPR045185	GO:0061630
	Acco13g0337	401	SMART	Ubox_2	11	74	IPR003613	GO:0004842\|GO:0016567
	Acco13g0337	401	Gene3D	-	227	389	IPR011989	-
	Acco13g0337	401	CDD	RING-Ubox_PUB	9	56	IPR045210	-
	Acco13g0337	401	Pfam	U-box domain	8	76	IPR003613	GO:0004842\|GO:0016567
	Acco13g0337	401	ProSiteProfiles	U-box domain profile.	7	81	IPR003613	GO:0004842\|GO:0016567
	Acco13g0337	401	SUPERFAMILY	ARM repeat	201	389	IPR016024	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco13g0337	Acco-ChrAcco13	2350299	2351504	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco13g0337	8	396	U-box Gene Family	AT1G49780	31.051	2.15e-43	154