LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco13g0325	ATGCCCGCTTGGTGGGGAAGAAAGTCCAGCAAGAACAAGGAGGAGCAGCGGCAACAGCAGCAGCCTCCCCCGCCTGAATCACATGGTGGAATTCAGTTTAATTTCATCAAATCACCGATCAGGAATGCTGCCAAGAAAGGTAGAGATAAACCTAAGAGCTTTGACGAGGTCTCAGCAGCGATTGTTTCTCGGAGTTCACCCAGGACCAGTAGGGATTTTACTCCTGTCGCCGCCGCTGCTCCCGTTTGTGGATCGTCCTCGGGATTTTCGTGTCTCGATTCTGATGGCGGCGAGAAGGTAGGCCATCCCTTGCCTCGACCGTCGATTTCGTCCCCGCAGAGCTTTGGGAACGATCAAGGAGATGGAGATGGCCTTGGATCTGCGTCGATCTCTGGTTCAAGCGTGAGTTCTTCTGGGTCCTACGATCATCATCCAGTCTCTCAATTTGATGGCATCAGGGGACGAGGTGAAATGAGGATTAACATGAGGCCAAAAAGCCCAGGTCCTGGGTCAAGAGGGCCCACCAGCCCGACTTCACCCCTCCATCCAAGATTGCATGTTTTAAGTATTGACTCTCCTACAGGCAAACAAGATGATGGAAGGAGTGAATGTCATCCATTGCCTCTACCACCAGGTTCACCGACTAGCCCTTCTGCTCTCTCCAATGCAAAAGCAAATAGTATTGTAGAAAACACTACCAACAATCAGCCCAAGTGGAAGAAAGGAAAGCTTTTAGGACGAGGGACATTTGGTCATGTTTACCTGGGATTTAACAGTGAAAGTGGACAAATGTGTGCAATAAAAGAAGTCGGAGTTTTTTCTGATGATCAAACATCGAAAGAGTGCCTCAAACAACTTAACCAGGAGATACATCTGCTCAGTTCATTTTCACATCCTAACATTGTTGAATACTATGGGAGTGACCTGGTAGAAGACACACTTTCTGTTTATTTAGAATATGTCTCTGGCGGTTCCATCCATAAACTACTTCAAGAATATGGTCCATTTAAGGAACCTGTTATTCAGAATTATGTTAGGCAGATTGTCTCTGGACTTGCATATCTGCATGGAAGAAACACAGTGCACAGGGATATCAAAGGGGCAAACATACTAGTTGACCCTAATGGTGAAATTAAGTTGGCGGACTTTGGAATGGCTAAACATATAAATTCTTCTACCTCCATGCTTTCTTTCAAGGGAAGTCCATATTGGATGGCACCTGAGGTTGTTATGAATACAAATGGCTACAGTCTTGCTGTGGATATATGGAGCTTGGGATGCACAATTCTGGAAATGGCTACATCAAAACCTCCATGGAGTCAGTATGAAGGGGTAGCTGCTATATTTAAAATTGGGAACAGCAAGGATATGCCTGAAATCCCAGAGCATCTTTCAAATGATGCCAAGTCTTTCATACAGCTTTGCTTACAAAGAGATCCGTCAGCTCGCCCAACTTCTCAAAAGCTGCTAGAGCATCCCTTTATTCGCGAACAATCAGCGACAAGAGCTGCCAATGTCAGCTTAACTAGAGATGCTTTCCCCTACATGTTTGATGGAAGCCGGACGCCGCCACATGTAGAGACTCATTCCAGTAGAACAAATATGACGTCAGTGGATGGAGATTATGCAATAAAGCCAACTTTTTCGACTTCACGAGCATTAAGGAGCCCAAGAGATAACACAAGGATGATTACATCTTTACCGGTATCACCCTGCTCAAGTCCATTGCGGCAATATGGATCATCAGCATACAAGAGCTGTATGCTTTCTCCTCCACATCCAACTTTCACCTCGGTGGGACAAAATACCTACAATTTTGGCGATCTCTCATCACATCCTGTGAGATCAAACGCCACCTTCACATTAGATCCTTGGAACGAGAGACCTCTATATAACGCCCATACGCCTGGCGGGTCCCCAAGGAGGAGACTCATTTAA	1938	0.4592	MPAWWGRKSSKNKEEQRQQQQPPPPESHGGIQFNFIKSPIRNAAKKGRDKPKSFDEVSAAIVSRSSPRTSRDFTPVAAAAPVCGSSSGFSCLDSDGGEKVGHPLPRPSISSPQSFGNDQGDGDGLGSASISGSSVSSSGSYDHHPVSQFDGIRGRGEMRINMRPKSPGPGSRGPTSPTSPLHPRLHVLSIDSPTGKQDDGRSECHPLPLPPGSPTSPSALSNAKANSIVENTTNNQPKWKKGKLLGRGTFGHVYLGFNSESGQMCAIKEVGVFSDDQTSKECLKQLNQEIHLLSSFSHPNIVEYYGSDLVEDTLSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYVRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSTSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSKDMPEIPEHLSNDAKSFIQLCLQRDPSARPTSQKLLEHPFIREQSATRAANVSLTRDAFPYMFDGSRTPPHVETHSSRTNMTSVDGDYAIKPTFSTSRALRSPRDNTRMITSLPVSPCSSPLRQYGSSAYKSCMLSPPHPTFTSVGQNTYNFGDLSSHPVRSNATFTLDPWNERPLYNAHTPGGSPRRRLI	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco13g0325	645	Gene3D	Transferase(Phosphotransferase) domain 1	235	517	-	-
	Acco13g0325	645	MobiDBLite	consensus disorder prediction	524	538	-	-
	Acco13g0325	645	MobiDBLite	consensus disorder prediction	107	144	-	-
	Acco13g0325	645	CDD	STKc_MEKK1_plant	238	495	-	-
	Acco13g0325	645	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	52	504	-	-
	Acco13g0325	645	ProSitePatterns	Protein kinases ATP-binding region signature.	245	268	IPR017441	GO:0005524
	Acco13g0325	645	Pfam	Protein kinase domain	240	495	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco13g0325	645	SUPERFAMILY	Protein kinase-like (PK-like)	238	566	IPR011009	-
	Acco13g0325	645	MobiDBLite	consensus disorder prediction	1	222	-	-
	Acco13g0325	645	ProSiteProfiles	Protein kinase domain profile.	239	495	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco13g0325	645	FunFam	Mitogen-activated protein kinase kinase kinase	237	519	-	-
	Acco13g0325	645	MobiDBLite	consensus disorder prediction	519	538	-	-
	Acco13g0325	645	SMART	serkin_6	239	495	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco13g0325	Acco-ChrAcco13	2292203	2297416	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco13g0325	1	558	MAP Kinase Kinase Kinase	AT1G53570	56.667	0.0	556

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Acco13g0325		Pkinase	4.5e-73	CL0016