Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0311 ATGAGTGGAAGTAGCAGAAGGCGTTCCTCAAAGTGGGATTTAAGGGATGAACCTGAGTTTGTCCCTGACAGCAAGCAATTGCGATCTGGGTGGTCCTCTGCCAATGTTACTGGTAGCAATAGTTCAAAGTGGTCTTATTTGGAAGACTATGATAGAGATCTGGATACCAAAATGGAATGGGACGCAGATGAAAGCTATGGAATGAAAATGTCTCCAGGGTTGGAGGAATGGAAACGCAAGAGGCGCAGTCACTCCCCAAAAAATGGTTTGGAAAGGAGTAGAAGCCGGAGTCGGAGCCCTGCCCATGGTTTTAGGTGGGAATCAGGAGTCAATGACAGAAATAGAATGAGAGCTGGAGGATTGCCCCAACCATGTAGAGATTTTGCTGTTGGAAAATGCAGAAGAGGCAGCCATTGCCATTTTCTTCACCATGATGATCGTAATTATGAGGATGGCTGGGACACTAGAAACAGGAAAGATGGACCTCCCAGATATTCTGCTCCCTATGAAAACAGGGACTATTCTGCTAGGAGTGGAAGATCAAATGAGACTTGTATCCATTTTGCACAAGGCAAATGTAGAATGGGAGCATCTTGCAAGTATGTGCATCATAGCAATTCTGATGACATGATCAAAGGAAATGTAGATGATTCAAATAGAGAGAGGGAATTTGATCCAAGGCGCAGAGAGAGTTCTTTTGATCGTGGTGGTGGGCATGAGCCAAGCCGCTTTAGTGATACTCCCTGCAAGTTTTATGCAGCAGGTAATTGTCGCAATGGTAAATATTGCAGGTTTTCTCATGATAGGCAGGCATCTAGGAGCCCAAATAGAAGATTAAGAGATGATAGGTGGGGGAACAATCCAGGCGGAGATCTGGCACTGGATAGGCCAAGGGGGAGTAACTCAGTTAGTCCTAGTAGAAGGCTAAGAGATGATAGATGGGGTCCAGATGGCAACATGATTGACATGGATAAAATGTGGGATGGTCCAAAACTGAATGATGCTGTTGCTGTCTCAGATACAGCAAAGCTGGGTGAAGATAAGAGTGGAAATATGGGTATACCAGAACCTGGATTCGCTACTTGGCCCAAGGCTGACGGATGGGGCAATAATTTAGATAACAACAAAGTGTATGCTGAACCACCATTCGTAGGTGACAAGAAAGCAGAGCAATGGAAGACAGAAAACGCTGGTGCCACCACGGGTGCTCCCCAATCGATTGGGACTGACAAATGGCTTGTTGATGCAGAAATGTCTCCTGATTGGAATTATGGGAGAGGATCTTCTGGGCATATTGAAGACAAGAGTGGGCAGAATAAACATGGTTTGAGCCAGGCTGGTGCATATTTAGCCACCTCCGATCATCACAGATTACAAGTTGCTCCAGGACAAGGTTTCAATCAGAACTCACAGAATGCAAATGCTTCGCGTCCTTCTAGCAGTAATGTGGTAGGACAAAGTCAAGGAGCTGTCCCTGTCGTTCCTCCACTTGGAGGGATCGTTGAAGCTATACAGAACCAAGCTTCTTCCGTAAAAAAGTACAGTGTTGAACCAAATATCATAGATGCAAGCTTACCGCATGTTAGTACTATAACTACTCCAACTCAAAACATGGTGAGCAATGAACAGTTTGCTCAACTTAGCAGCCTCTCAGCCTCTCTGGTTCATTTCCTGGGAACAGGTCAGCAACTTCCACAAATTTATGCTGCCCTAAGTTCTCATGATGTGAAGGACACATCCTCCCTAGCCAAAGCTGAAATGTCTGGGGAGCCTATTTCCAGTGCATACATCAAGCCAGATCCTGTTATTGGATCCCGGAAGCAGTATGATCCAATGAGTGATAGTATGAAGCCAAAGAAGACTGATGCAGCTGGAATCACGCCAGCCTTTTCTCCTAATAAAACAATTGCTGATAGTTCAGGGAGACAAAAGCTTGGTGATTCTTGCAAGACTTCAGAAGAACAAATTGTCGAGAGTGAAAATTTGATCCCATTGCAGCCTGGTCTAAAAGTTGAAGCTAATAAGGGAAACAATGACGTGGCAGCTGAGGAAAGACAAGATCTTCAAGCAGATGATAAAAGTGCAAAAGATAATGGTCCTTCAGAAAATATGGACCAAAATGGGCCTGATGAGGCGAAGAAAATGAAAGATGTGAAGGGGATTCGTGCTTTTAAATTTGCGCTGGTTGAGTTTGTTAAGGAGCTTTTGAAACCAACATGGAAAGATGGTCACATCAACAAAGAACATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACCATGCAGGGGTCTCATATCCCTCAGACACAAGAAAAAATTGATCACTATCTGTCATCCTCTAAACCAAAGCTTACCAAACTTGTACAGGCATATGTTGAAAAGGTTCAGAAGGCTTAG 2409 0.44 MSGSSRRRSSKWDLRDEPEFVPDSKQLRSGWSSANVTGSNSSKWSYLEDYDRDLDTKMEWDADESYGMKMSPGLEEWKRKRRSHSPKNGLERSRSRSRSPAHGFRWESGVNDRNRMRAGGLPQPCRDFAVGKCRRGSHCHFLHHDDRNYEDGWDTRNRKDGPPRYSAPYENRDYSARSGRSNETCIHFAQGKCRMGASCKYVHHSNSDDMIKGNVDDSNREREFDPRRRESSFDRGGGHEPSRFSDTPCKFYAAGNCRNGKYCRFSHDRQASRSPNRRLRDDRWGNNPGGDLALDRPRGSNSVSPSRRLRDDRWGPDGNMIDMDKMWDGPKLNDAVAVSDTAKLGEDKSGNMGIPEPGFATWPKADGWGNNLDNNKVYAEPPFVGDKKAEQWKTENAGATTGAPQSIGTDKWLVDAEMSPDWNYGRGSSGHIEDKSGQNKHGLSQAGAYLATSDHHRLQVAPGQGFNQNSQNANASRPSSSNVVGQSQGAVPVVPPLGGIVEAIQNQASSVKKYSVEPNIIDASLPHVSTITTPTQNMVSNEQFAQLSSLSASLVHFLGTGQQLPQIYAALSSHDVKDTSSLAKAEMSGEPISSAYIKPDPVIGSRKQYDPMSDSMKPKKTDAAGITPAFSPNKTIADSSGRQKLGDSCKTSEEQIVESENLIPLQPGLKVEANKGNNDVAAEERQDLQADDKSAKDNGPSENMDQNGPDEAKKMKDVKGIRAFKFALVEFVKELLKPTWKDGHINKEHYKTIVKKVVDKVTGTMQGSHIPQTQEKIDHYLSSSKPKLTKLVQAYVEKVQKA 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0311 802 Pfam CCCH-type zinc finger 248 268 IPR041367 -
Acco13g0311 802 MobiDBLite consensus disorder prediction 26 43 - -
Acco13g0311 802 MobiDBLite consensus disorder prediction 632 646 - -
Acco13g0311 802 MobiDBLite consensus disorder prediction 206 245 - -
Acco13g0311 802 MobiDBLite consensus disorder prediction 684 699 - -
Acco13g0311 802 MobiDBLite consensus disorder prediction 73 101 - -
Acco13g0311 802 MobiDBLite consensus disorder prediction 424 443 - -
Acco13g0311 802 MobiDBLite consensus disorder prediction 8 23 - -
Acco13g0311 802 SMART c3hfinal6 121 145 IPR000571 GO:0046872
Acco13g0311 802 SMART c3hfinal6 243 269 IPR000571 GO:0046872
Acco13g0311 802 SMART c3hfinal6 180 205 IPR000571 GO:0046872
Acco13g0311 802 MobiDBLite consensus disorder prediction 267 285 - -
Acco13g0311 802 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 801 - -
Acco13g0311 802 ProSiteProfiles Zinc finger C3H1-type profile. 179 206 IPR000571 GO:0046872
Acco13g0311 802 MobiDBLite consensus disorder prediction 684 713 - -
Acco13g0311 802 MobiDBLite consensus disorder prediction 1 43 - -
Acco13g0311 802 MobiDBLite consensus disorder prediction 610 671 - -
Acco13g0311 802 ProSiteProfiles Zinc finger C3H1-type profile. 119 146 IPR000571 GO:0046872
Acco13g0311 802 Gene3D - 121 223 - -
Acco13g0311 802 MobiDBLite consensus disorder prediction 150 176 - -
Acco13g0311 802 MobiDBLite consensus disorder prediction 150 166 - -
Acco13g0311 802 MobiDBLite consensus disorder prediction 461 488 - -
Acco13g0311 802 ProSiteProfiles Zinc finger C3H1-type profile. 243 270 IPR000571 GO:0046872
Acco13g0311 802 MobiDBLite consensus disorder prediction 206 241 - -
Acco13g0311 802 MobiDBLite consensus disorder prediction 61 118 - -
Acco13g0311 802 MobiDBLite consensus disorder prediction 462 488 - -
Acco13g0311 802 SUPERFAMILY CCCH zinc finger 246 268 IPR036855 GO:0046872
Acco13g0311 802 Pfam RNA-binding, Nab2-type zinc finger 124 143 - -
Acco13g0311 802 Pfam RNA-binding, Nab2-type zinc finger 185 203 - -
Acco13g0311 802 Gene3D - 237 289 - -
Acco13g0311 802 MobiDBLite consensus disorder prediction 267 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0311 Acco-ChrAcco13 2198687 2202914 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco13g0311 zf-CCCH_2 0.023 CL0537