Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0304 ATGCTTAACTCCAATGAAGCAGATATTGAAATATTCTTCGACTCAGCAGATTTTCTGCCACCCCAAAACTCTGTTTTAGACGAAGAGTTGGCCAGTAACAAGTTTGGGTATGAAGTTTGGTTGAATAATCCTCAGAGTGTGAAGGAACGACGGCAACGTTTTTTCCAGGAAATGGGTTTTGCTGATTTTTCCTCAAACGTTTGCTCTCAAGAGATTAACGTTAACGACTTGGAACTTGAAAGGATAACGGAGAGCGAAGGGGCAGTATCAAGTGCCTTCAGTTCTTCTCCTGAAGCAAATGTCTTGTTTGATGAACGTAACGGAGGTGTAAACTTTGAAAGGAAGGTGTGTGAGTCATCTTCTTCTTCTTCGGGCGAAGATGACAGACTCGGAGAAGCTGAGGTATCAGAAGAATGTCAATATGGTCCCTTAGATATGAGCAAAAAGAAAATGAAGGGCTTGTGGAAGCTCTTTGTGAAGAGCAGGAAAACAATTGGAGAGAAAGTGAGATCAAAATTTAAAAAAGAGATGAGTAAAAGTCGCAGAATAAACGTAAAGCAGAACAAGAAGAGGTGGATGGAATTGAGTGCCTTGTATTTAGGAAAAGAGATTAGAGCTCATGAAGGCCTAATCTGGACTATGAAGTTTAGTCCTAATTGCCAGTTTCTGGCAAGTGGTGGTGAAGATGGGGTCGTACGCGTATGGCGTGTTATATCAATGGATACTTCAAGCATTTGCTTCAGTGCAGAAGACACTACTACTAGTAAAGTGAAACAAGAAATCTCTTGTTCTTGGAGGAGAAAGTCAAATATATCATTCATGGCTCTTCCAAACAAGGTTCTCCAAATTGAGGAATCACCCCTGCAAGAATTCTTTGGTCATACCAGTGATGTCTTGGACTTGGCTTGGTCTGATTCAAATATTCTTTTGTCGTCCTCAATGGACAAAACGGTTCGTTTGTGGCAAATTGGTTGTGATCAATGCATGGGAGTCTTCCATCACAATGACTATGTGACATGCATCCAAGTAAACCCAGTTGATAAAAGCTACTTCATCAGTGGGTCCATAGATGGCAAAGTCCGAATATGGGGGTTATGTGAAGAGCGTGTTGTTGATTGGGCAGATGTAAGGGATGTGATTACGGCTGTGAGTTACCAGCCAGATGGGAAGGGGTTTGTAGTTGGATCCATCACTGGATCTTGTCGTTTTTATATTGCTTCAGGCAAACATTTCCAGCTTGAGGCAGAGATATGGGTTCATGGGAAAAAGAGATCAGCTTGCAACAAGATTACTGGCATTCAGTTTTCACAGAAAAAACACCAGAGAGTTATGATTACATCAGAAGATTCTAAAATTCGTGTGCTTGATGGCTTTGAACTTGTCCAGAAATTTAAAGGCGTTACGAAATCGGGAAGCCAATTGTGTGGCTCATTTACATCAACAGAAAACCATATCATTTCTGTTGGAGAGGACTCCCATGTGTTCATTTGGAATTTCAATGACTTGGAAAATTCATCATCCAAACACACAAAATCTGAGCGTTGCTGTGAGTACTTTTCCACTGAAGGTGTTACTGTGGCAATACCCTGGTTGGTAAATAGCACAGAACAAACAAGCTTATGTGGTAACTCAGAAATGCAACATGTCCACGAGGCTCGTCCTAGTGTTAGAGATTCAGAGCGTTTTTCTCTTGGTAACTGGTTCAACATGGAAGGGACTTGCCGGGGTTCAGCGACGTGGCCAGAAGAGAAACTTCCAAGTTGGAATATACCATTTGCAGAAGATGAATTTGATCCCATAGATGAAAGAATTGGATCAGAAACATGGGGCCTATCCTTTGTGGTGGCTGGTTTGGATGGAACTATCAAGACATTCCATAACTTTGGATTGCCTGTTAGGCTTTAG 1905 0.4163 MLNSNEADIEIFFDSADFLPPQNSVLDEELASNKFGYEVWLNNPQSVKERRQRFFQEMGFADFSSNVCSQEINVNDLELERITESEGAVSSAFSSSPEANVLFDERNGGVNFERKVCESSSSSSGEDDRLGEAEVSEECQYGPLDMSKKKMKGLWKLFVKSRKTIGEKVRSKFKKEMSKSRRINVKQNKKRWMELSALYLGKEIRAHEGLIWTMKFSPNCQFLASGGEDGVVRVWRVISMDTSSICFSAEDTTTSKVKQEISCSWRRKSNISFMALPNKVLQIEESPLQEFFGHTSDVLDLAWSDSNILLSSSMDKTVRLWQIGCDQCMGVFHHNDYVTCIQVNPVDKSYFISGSIDGKVRIWGLCEERVVDWADVRDVITAVSYQPDGKGFVVGSITGSCRFYIASGKHFQLEAEIWVHGKKRSACNKITGIQFSQKKHQRVMITSEDSKIRVLDGFELVQKFKGVTKSGSQLCGSFTSTENHIISVGEDSHVFIWNFNDLENSSSKHTKSERCCEYFSTEGVTVAIPWLVNSTEQTSLCGNSEMQHVHEARPSVRDSERFSLGNWFNMEGTCRGSATWPEEKLPSWNIPFAEDEFDPIDERIGSETWGLSFVVAGLDGTIKTFHNFGLPVRL 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0304 634 PANTHER WD REPEAT DOMAIN 44 165 631 IPR040324 -
Acco13g0304 634 Gene3D - 134 373 IPR015943 GO:0005515
Acco13g0304 634 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 331 365 - -
Acco13g0304 634 SMART WD40_4 457 498 IPR001680 GO:0005515
Acco13g0304 634 SMART WD40_4 284 322 IPR001680 GO:0005515
Acco13g0304 634 SMART WD40_4 410 456 IPR001680 GO:0005515
Acco13g0304 634 SMART WD40_4 325 364 IPR001680 GO:0005515
Acco13g0304 634 SMART WD40_4 366 405 IPR001680 GO:0005515
Acco13g0304 634 SMART WD40_4 197 236 IPR001680 GO:0005515
Acco13g0304 634 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 245 IPR001680 GO:0005515
Acco13g0304 634 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 323 - -
Acco13g0304 634 SUPERFAMILY WD40 repeat-like 199 501 IPR036322 GO:0005515
Acco13g0304 634 ProSiteProfiles Trp-Asp (WD) repeats profile. 331 365 IPR001680 GO:0005515
Acco13g0304 634 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 323 IPR001680 GO:0005515
Acco13g0304 634 Gene3D - 374 573 IPR015943 GO:0005515
Acco13g0304 634 PRINTS G protein beta WD-40 repeat signature 309 323 IPR020472 -
Acco13g0304 634 PRINTS G protein beta WD-40 repeat signature 223 237 IPR020472 -
Acco13g0304 634 PRINTS G protein beta WD-40 repeat signature 351 365 IPR020472 -
Acco13g0304 634 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 237 - -
Acco13g0304 634 Pfam WD domain, G-beta repeat 327 363 IPR001680 GO:0005515
Acco13g0304 634 Pfam WD domain, G-beta repeat 286 321 IPR001680 GO:0005515
Acco13g0304 634 Pfam WD domain, G-beta repeat 203 235 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0304 Acco-ChrAcco13 2150547 2153107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0304 288 456 U-box Gene Family AT2G33340 28.492 3.66e-07 51.2