Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0280 ATGGACTTTGACGAATACGATTACTTGGAGAAGACAGTGGAGGAGCCGGAAGATCGAGATTCGAAGAAGAAGAAGGAGAGCAGCGAGAAGGGTGAAAGGAGTTACAGGAAGCGCGAGGTAGACGGGAATCTGGATGGTGAAGAAAAGAAGAGCAAGAAGATCAGAGGCGACGAGGAGAATGGGTCTAAGAAGGATCGTGATGACCGCGACAGAGAACGGTCTAGCCGCGAAAAGGAGCGCCATAGGAGCGGCAAGGAGAGGGACGGGGATAGAGATGGGGAGAGAGAGCAAGAGAGGAGTAATAGAGAGAAGGATAGGGAGAAGGAGAGAGATCGAGATAGGGATAAGGATAGGGAGAGGGATAGAGAAAGAAGAGGTAAAGAGAGGGAGAAGGATAGAGACAGTGAGAGGGAGAGGAGAGAGAGGGATAAAGAGAGGGAGAGAGAGAGGGAGAGAAGGGAGAGGGAGGAGAGGGAGAGGTCCAGGAGAAGCAGAAGTCGTTCTGACAGAGATAGAGAGAGAGAACGAGAACTGGAAATTACTCAAATTAGAGATAGCCGGAGATTCAGAGACAAGAAAGAGGCCGTGGAGCCTGAGGCAGATCCTGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATACCCTTAAAGGCCACAGAGAGAGATGTTTATGAATTTTTCTCAAAAGCTGGGAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAATTCAAGACGGTCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGCCAGTGCCAATGGCAATTGCGCTCTCTGGTCAATTGCTTCTTGGACAACCCGTAATGGTCAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCTAATGCTTCCACTGGAGCTGCAGGTGTAGCAGGACCATATGGAGCAGCAGACAGGAAACTTTATGTGGGAAACCTTCATTTCAACATGACAGAGAGTCAGCTGAGGGAAATTTTTGAGCCGTTTGGTTCAGTGGAGCTTGTACAACTGCCTACTGACCTGGAGACAGGACATTGCAAGGGTTTTGGCTTTATTCAATTTGCCCATCTGGAACATGCCAAAGCAGCTCAGAGTTTAAATGGAAAACTGGAGATTGCTGGTAGGACTATCAAGGTTTCATGTGTGACAGATCACATCGGGAGCCAAGACACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCCTTAAATGCTCAATCTAGAGCTTTGCTTATGCAGAAGCTGGATCGATCCGGCATTGCCCCAAGCATTGTGGGGTCTGTTGGTGTGCCCATTGCGAATGGGTCAGTTCCCGCTCAACAGTCTGTTAATTTGCCTAGTGCTCCAGGTTTAATGCCCACATCAGCTCATCCACCACAAATCATGTCTTCCCCTGTGGTAGAACCTGTAGGGAGCCCTAGCGAGTGTCTATTGTTGAAGAATATGTTTGATCCTACCACTGAGACGGAACCAGATTTTGATATTGACATTAAGGAGGATGTAGAAGAGGAATGTTCTAGATTTGGCCGTGTGAAGCATATTTATGTAGACAAAAGTGCAGGATTTGTGTATTTGCGTTTTGAATCAGCGGAAGCAGCAAGTGCTGCTCAACGAGCCATGCACTTGAGATGGTTTGCCCGCAGGTTGATTTCAGCCATTTTCATGGAACCCCAGCTATATGAAGCCAAATTTAAAATGGAAGCTTGA 1728 0.4705 MDFDEYDYLEKTVEEPEDRDSKKKKESSEKGERSYRKREVDGNLDGEEKKSKKIRGDEENGSKKDRDDRDRERSSREKERHRSGKERDGDRDGEREQERSNREKDREKERDRDRDKDRERDRERRGKEREKDRDSERERRERDKERERERERREREERERSRRSRSRSDRDRERERELEITQIRDSRRFRDKKEAVEPEADPERDQRTVFAYQIPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMPVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASTGAAGVAGPYGAADRKLYVGNLHFNMTESQLREIFEPFGSVELVQLPTDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHIGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAPSIVGSVGVPIANGSVPAQQSVNLPSAPGLMPTSAHPPQIMSSPVVEPVGSPSECLLLKNMFDPTTETEPDFDIDIKEDVEEECSRFGRVKHIYVDKSAGFVYLRFESAEAASAAQRAMHLRWFARRLISAIFMEPQLYEAKFKMEA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0280 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Acco13g0280 575 CDD RRM3_RBM39_like 481 562 - -
Acco13g0280 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 387 IPR000504 GO:0003723
Acco13g0280 575 FunFam Splicing factor CC1-like 132 292 - -
Acco13g0280 575 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 402 500 IPR029123 -
Acco13g0280 575 Gene3D - 303 400 IPR012677 -
Acco13g0280 575 FunFam Splicing factor CC1-like 293 398 - -
Acco13g0280 575 Gene3D - 135 294 IPR012677 -
Acco13g0280 575 Gene3D - 478 575 IPR012677 -
Acco13g0280 575 CDD RRM1_RBM39_like 208 280 - -
Acco13g0280 575 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 571 IPR006509 GO:0003723|GO:0005634|GO:0006397
Acco13g0280 575 NCBIfam splicing factor, CC1-like family 90 571 IPR006509 GO:0003723|GO:0005634|GO:0006397
Acco13g0280 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 381 IPR000504 GO:0003723
Acco13g0280 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 276 IPR000504 GO:0003723
Acco13g0280 575 Coils Coil 137 161 - -
Acco13g0280 575 MobiDBLite consensus disorder prediction 1 176 - -
Acco13g0280 575 MobiDBLite consensus disorder prediction 12 176 - -
Acco13g0280 575 SUPERFAMILY RNA-binding domain, RBD 308 562 IPR035979 GO:0003676
Acco13g0280 575 SUPERFAMILY RNA-binding domain, RBD 200 288 IPR035979 GO:0003676
Acco13g0280 575 SMART rrm1_1 208 280 IPR000504 GO:0003723
Acco13g0280 575 SMART rrm1_1 310 383 IPR000504 GO:0003723
Acco13g0280 575 SMART rrm1_1 483 559 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0280 Acco-ChrAcco13 1956293 1961856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0280 289 382 Eukaryotic Initiation Factors Gene Family AT4G34110 35.789 2.26e-08 55.1