Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0278 ATGTCAAAGGTGGCCAAGGAAGAAGGTGAACATAGAAGCAATCCCGTGACGTCATCTATGCCGATGATATTTCCAGATATAGACAAGGAGAGGGAGATGTCTGCCATGGTTTCAGCTTTGACCCAAGTTGTGTCTGGAGATGCGCCTTCTGATTATACGGCCTCTCATCAATACTTAACGTACCTCAACACAGCTCAAGCTTCTGCCACACCATCTTCGTCTTCTTCATTCTACGGTTCTCGTTCTGCTACAACGACAAGTATGGAAGATGGCACGTTCTCACAGAGAGGCTCATCCTCATCCCCTGCTGTTCCAACAAACAGAGAAGGGAGGAGCGAGATGATGGAAATGAGAAATGCGGTGTATGAATACAGAGCAGAGAGCAGGGGAGAGCAGGGGAGAAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGTAAATGGGCTGCAGAAATCAGAGATCCATTTAAAGCAGCGAGGGTGTGGTTAGGTACATTTGACACAGCTGAAGCCGCAGCCAGAGCATACGACGAAGCTGCCCTGCGTTTCAGAGGCAACAAGGCTAAACTCAATTTCCCTGAAAATGTCACCTTGCGTTCCCCTACCCCAAATCTTCACAACTTGCAGATTGATCACATGGTTTCACATGTTCAGCCATCCCTGACGCCGCCGCCACCGCCTGCATCCTTCTCCTCTCCGTTTTCCGCCTCTGCCTCCACCGTTACTACACTTCCTTTGCTTTATCCTGCACAGACTCAGATGAGCGATTCTGAATATTTAGTACCTTCATCGTTTTCTCCCACCGGTTACACCTTTTATTCCGGATAA 828 0.4879 MSKVAKEEGEHRSNPVTSSMPMIFPDIDKEREMSAMVSALTQVVSGDAPSDYTASHQYLTYLNTAQASATPSSSSSFYGSRSATTTSMEDGTFSQRGSSSSPAVPTNREGRSEMMEMRNAVYEYRAESRGEQGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVTLRSPTPNLHNLQIDHMVSHVQPSLTPPPPPASFSSPFSASASTVTTLPLLYPAQTQMSDSEYLVPSSFSPTGYTFYSG 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0278 275 CDD AP2 136 195 IPR001471 GO:0003700|GO:0006355
Acco13g0278 275 FunFam Ethylene-responsive transcription factor 2 135 194 - -
Acco13g0278 275 ProSiteProfiles IQ motif profile. 117 143 IPR000048 GO:0005515
Acco13g0278 275 Pfam AP2 domain 136 185 IPR001471 GO:0003700|GO:0006355
Acco13g0278 275 MobiDBLite consensus disorder prediction 69 107 - -
Acco13g0278 275 SUPERFAMILY DNA-binding domain 136 194 IPR016177 GO:0003677
Acco13g0278 275 SMART rav1_2 136 199 IPR001471 GO:0003700|GO:0006355
Acco13g0278 275 MobiDBLite consensus disorder prediction 1 23 - -
Acco13g0278 275 Gene3D AP2/ERF domain 135 195 IPR036955 GO:0003700|GO:0006355
Acco13g0278 275 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700|GO:0006355
Acco13g0278 275 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
Acco13g0278 275 PANTHER DNA-BINDING DOMAIN 80 222 IPR044808 GO:0003700|GO:0009873
Acco13g0278 275 MobiDBLite consensus disorder prediction 69 113 - -
Acco13g0278 275 ProSiteProfiles AP2/ERF domain profile. 136 193 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0278 Acco-ChrAcco13 1934129 1935146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0278 127 213 AP2-EREBP Transcription Factor Family AT5G61890 68.966 2.13e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco13g0278 AP2 2.9e-15 CL0081