Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0275 ATGGGTTGCGTCAACACCAAGCCTTCTCCCTCTCGCGATGAGAAGTCGAAACACGACTCTGGCTATGGTAGTCGAAGCAGATCAGCCACACACACGAGTCGCAGCTATAATTATCAGAGGCCACTCTCAGATAACAAGCTCGAGCAGAGGAATTCAACTTCAAGAACAGCAGGGAATGGCGGTGGCGGCGGTGTCAGGGAAGAAGCGAGAGGAGAAAGGGTGGTTGGTGGAGAAGAGAAGCATGAGGTTGGCAATGTTTCAAAGAGATTTGTGGACAAGATTGGAAAAGGTGTGGATGTGGGTGCTTGGCCTAAGTGGTTGGTTGATAATATACCTGCACATGTTCTGGCTGTTCTTGTTCCTAAGAGTGCTGATTGTTATGAAATGCTTGCCAAGATAGGACGTGGAACATACAGCAACGTGTACAAGGCCAGAGAAAAGGCAACGGGGAAGATTTTTGCCATGAAGAAGGTTCGGTTTGACACATCAGATTCTGAAAGTATAAAGTTCATGGCGAGAGAAATCATGATTCTGCAGAAGCTGGACCATCCCAACGTCATAAAGCTTGAAGGCATAGCCACCTCAAGAATGCAGTATAGTCTCTACCTAGTCTTCGATTACATGCAGTCCGACCTTACCCGAGTCATCACCCGCCCCGGCGAGAAACTCACTGAACCACAGATTAAGTGTTATATGCAGCAATTGCTTTCTGGACTGCAGCATTGCCATGAGAGGGGAGTGATGCACCGAGACATAAAAGCTTCAAACTTGTTAATAGACAAGAAAGGAGTGCTAAAAGTTGCAGATTTTGGGCTGGCAAATTCCTTTGATCTTAAACCGAAAGGTCCTTTCACTAATCGAGTGGTGACACTCTGGTATAGAGCTCCTGAATTACTTTTGGGTTCAACTGATTATGGTTTCGACATTGATCTCTGGAGTGCTGGATGCCTCTTAGCTGAGATGTTCTTGGGAAAGCCCATCATGCCTGGCAGGACTGAGGTTGAACAATTGCACATGATCTTCAAGCTACGTGGTTCTCCAACAGAGGATTACTGGAAGAAATTAAAGCTAATGACAAGTTATAGGCCACCAAATTACAAGCCTAATTATGAGGAAGTCTTCAAGGATTTTCCTCCCTCTTGTATGGGCCTCTTAACTACGCTTCTCGATCTTGATCCTAACTATCGTGGCACTGCTGCCTCTGCTCTCCAATCTGAATTCTTCAAGACTAGTCCTTTCCCGTGCTCTCTTTCAGCTCTACCAGTAATATACAAAGACGAGGATGAGCGCTCACATACTAAAAGACGCAAAAAGCATAGGCCATTCAAGAAAGGACAAATACCTCAGCCAAGTAACTTGACTCGGTCAGGAAAGAATAAAGTTGCCGACGGACAAGTCCTGAGAAATCCAGAATTGTCAAAAGAGGAGAAGAATGTGGAAGGAAGCATGTCTGGTTTAGAAACGGGGTATAGTGGAAGCAGCACATCGTCGAACTCAAAACAATTTACAACAGAAGGAAGCTTGAATACATCACTGACTCTGTCTCCAGTTTTTCTGTCAAGTGGTGAGAAAAGATCTCCCAGGACTGAAGCACATCCTAATGCTCTCAAGAACGTCAAGAACTACAGCATCGGCTACTTGCAGGCCATGATGAGTGGCAAAGAAGGCAATGACTACTATGGTCCATTTCGCCGATCTTTTTCTTTTGTGGAATCTCAGTTTGATCCTGACAAGTTATCTAATCTCATTGAATTAAATAAGGGGTTGGGCAATCGAAATTGA 1782 0.4495 MGCVNTKPSPSRDEKSKHDSGYGSRSRSATHTSRSYNYQRPLSDNKLEQRNSTSRTAGNGGGGGVREEARGERVVGGEEKHEVGNVSKRFVDKIGKGVDVGAWPKWLVDNIPAHVLAVLVPKSADCYEMLAKIGRGTYSNVYKAREKATGKIFAMKKVRFDTSDSESIKFMAREIMILQKLDHPNVIKLEGIATSRMQYSLYLVFDYMQSDLTRVITRPGEKLTEPQIKCYMQQLLSGLQHCHERGVMHRDIKASNLLIDKKGVLKVADFGLANSFDLKPKGPFTNRVVTLWYRAPELLLGSTDYGFDIDLWSAGCLLAEMFLGKPIMPGRTEVEQLHMIFKLRGSPTEDYWKKLKLMTSYRPPNYKPNYEEVFKDFPPSCMGLLTTLLDLDPNYRGTAASALQSEFFKTSPFPCSLSALPVIYKDEDERSHTKRRKKHRPFKKGQIPQPSNLTRSGKNKVADGQVLRNPELSKEEKNVEGSMSGLETGYSGSSTSSNSKQFTTEGSLNTSLTLSPVFLSSGEKRSPRTEAHPNALKNVKNYSIGYLQAMMSGKEGNDYYGPFRRSFSFVESQFDPDKLSNLIELNKGLGNRN 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0275 593 FunFam Putative serine/threonine-protein kinase 210 446 - -
Acco13g0275 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Acco13g0275 593 MobiDBLite consensus disorder prediction 66 80 - -
Acco13g0275 593 ProSiteProfiles Protein kinase domain profile. 127 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0275 593 MobiDBLite consensus disorder prediction 428 507 - -
Acco13g0275 593 MobiDBLite consensus disorder prediction 25 59 - -
Acco13g0275 593 SMART serkin_6 127 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0275 593 Pfam Protein kinase domain 127 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0275 593 SUPERFAMILY Protein kinase-like (PK-like) 120 414 IPR011009 -
Acco13g0275 593 MobiDBLite consensus disorder prediction 484 507 - -
Acco13g0275 593 FunFam probable serine/threonine-protein kinase At1g54610 114 209 - -
Acco13g0275 593 Gene3D Transferase(Phosphotransferase) domain 1 210 446 - -
Acco13g0275 593 PANTHER CELL DIVISION PROTEIN KINASE 125 414 - -
Acco13g0275 593 MobiDBLite consensus disorder prediction 10 24 - -
Acco13g0275 593 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524
Acco13g0275 593 Gene3D Phosphorylase Kinase; domain 1 117 209 - -
Acco13g0275 593 MobiDBLite consensus disorder prediction 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0275 Acco-ChrAcco13 1906211 1909111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0275 122 440 Core Cell Cycle Gene Families AT5G10270 47.353 6.94e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Acco13g0275 Pkinase 1.4e-70 CL0016