LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco13g0271	ATGTCAACAACCACACGATCGATTTTGAACCATGGTGGTAACTTGTTCGAGGATCAGCAGTATGTGATGCATACACAGCTGGGGTTCCTTCCCAATTTCCCAGCAAATCTGACCTTTCCTTCTATGGGCTGCCATCAATCTTTGAAGGGTTTCCATAATACTATGGGTAGTCCTTCGCTTTCATCCGAAACAGCTTCTACCGCTGCAAATCTAACCGAAACCCTATTTGCAGCCACAGCTCAAAAGCCAAGGCAGGACGTCGCTTCTAGCTTTGGAGTACCAACCCATCATCTCCTTTCCTTGAACACATCAAGTGTACTCAATCCATGGGGATGGGGAGAAGTAAGCGAATGCTTGAGCAGTAAAAAAAGTGGAGGAGAGAATGGTCACTGTCTAGGGATATCGGCAATGAAGATGAAGAAGATAAAGGGAAGGAGAAAGGTGAGAGAGCCTAGGTTTTGCTTCAAGACCATGAGCGATGTCGATGTCTTGGATGATGGCTACAAGTGGAGGAAGTACGGACAGAAGGTGGTCAAGAACACCCAACATCCCAGAAGCTACTATCGGTGCACACAGGACAATTGCCGCGTGAAGAAGAGAGTGGAACGCTTGGCGGAGGATCCGAGGATGGTAATAACAACGTACGAAGGGAGACACGCACACTCTCCTTCCAATGATCTTGAAGACTCACAAGCTCCTTCTCAGCTTACTGATTTCTTGTGGTAG	726	0.4738	MSTTTRSILNHGGNLFEDQQYVMHTQLGFLPNFPANLTFPSMGCHQSLKGFHNTMGSPSLSSETASTAANLTETLFAATAQKPRQDVASSFGVPTHHLLSLNTSSVLNPWGWGEVSECLSSKKSGGENGHCLGISAMKMKKIKGRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSNDLEDSQAPSQLTDFLW	241

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco13g0271	241	MobiDBLite	consensus disorder prediction	226	241	-	-
	Acco13g0271	241	FunFam	WRKY transcription factor 57	150	224	-	-
	Acco13g0271	241	SUPERFAMILY	WRKY DNA-binding domain	156	223	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco13g0271	241	SMART	WRKY_cls	164	223	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco13g0271	241	Pfam	WRKY DNA -binding domain	165	221	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco13g0271	241	Gene3D	WRKY domain	151	217	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco13g0271	241	MobiDBLite	consensus disorder prediction	216	241	-	-
	Acco13g0271	241	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	70	224	IPR044810	GO:0003700
	Acco13g0271	241	ProSiteProfiles	WRKY domain profile.	159	224	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco13g0271	Acco-ChrAcco13	1872317	1873743	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco13g0271	9	241	WRKY Transcription Factor Family	AT4G39410	43.854	5.96e-64	199

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Acco13g0271		WRKY	6.5e-25	CL0274