Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0253 ATGAATTCGGTGCCCAACTTCTTTGTTCCGGTTTTCTCCCTTTGTTTTCTTTCTCTGCTCTTCTCGGGTTTTGCCTCAGAAGCTGAACTCCGATCTTTGCTCGAATTCAAGAAAGGGATTGATAGGGATCCGATTGGAAGAGTTTTTGACTCATGGAAGCTGTCTTCACTCAGCGACCTCAACGACTGTCCTCATTCTTGGGCTGGAGTGGCCTGCGAAGATGGAACCGGCAACGTCACCGCCGTGGTCCTTGATGGGTTCAGTTTGGGGGGTGAGCTGAAATTTCACACTCTACTTGAACTCAAGATGCTAAAGAATCTCAGCCTCTCCGGAAATGACTTTACTGGGCGGTTGCCGCCGGCATTGGGGACATTGACCACTTTGCAGCATTTGGATCTTTCCAACAACAAGTTCTACGGGCCGATCCCAGCTCGAATTAATGATCTTTGGGGATTGAATTATCTCAATTTGTCTAAGAATAACTTCAAGGGTGGGTTTCCGGGAGGATTATATAATCTTCAGCAGCTGAGAGGGCTGGATTTGCGTTCGAATCAGCTTTGGGGTAATATTGGTGATGTATTGTCCGCATTGCGGAATGTGGAGCATCTTGATTTGAGCTCTAATAAGTTCTACGGGGGGCTATCGCTTGGAACGGAGAATGTTTCTGGCTTGGCGAATACGGTCCATTTTCTAAATCTGAGTTATAACGAATTAAATGGCCCGTTCTTTGGGGGTGATTCAATTGCATTGTTTCGTAATCTGCAAGTTCTGGATTTGGGTCACAATCAGATCAGGGGGGAGCTTCCCTCTTTTGGGTCATTGCCAAGTCTTCGAGTTTTGCGACTTGACAGTAATCTATTATATGGGTCAATACCGGAGGAGTTGTTAGAAACTTCTATGTCACTAGAAGAATTGGATCTTAGCGACAACGGGTTTACGGGTTCAATTCCTTCAATCAACTCGACATCTTTGAATATTTTGAATCTTTCATCAAATGGTTTATCAGGCTCTTTGCCAACATCTTTGAGAAAATGCACTGTGATGGACTTAAGCAGGAATATGTTAGATGGTGATGTATCTGTTATGCGGAATTGGGAAGCCACATTTGAGGTTCTTGATCTGAGCTCAAACAGGCTTTCAGGAAGCTTTCCCAATTTGACAAATCAGTTTGAGGGACTAACCACACTTGCTCTCAGGAATAATTCCTTAGTTGGAACTTTGCCTCCTAATTTGGGGACCTATTCTAAATTGTCCGTGGTTGATTTCAGTTTGAATGAACTCAATGGCCCTATTCCTGTTAGTTTATTTACTTCCACAACATTGACAAGCCTGAATCTTTCTGGAAATCATTTTACTGGGTCAATTCCTCTTGAAAGGTCAGGAGCCAGTGAATTAATAATTATGACACCTTATCGGCCAATGGAATATCTTGATTTATCTGATAACTCCTTAAAAGGTATCTTACCTTCTGACATTAGTAGGTTGGGTGTGCTCAAACTGTTGAATCTTGCCAGGAATGATTTTTCAGGACAGCTGCCCAGTGAATTGAGCAAACTTGTTAGTTTGGAGTACCTTGATTTGTCTAACAATAGATTTAAGGGACAAATTCCTGATAAGCTTTCATCGAACTTGAATGTGTTTAATGTGTCCAATAATGATTTATCTGGTGATGTTCCAGATAATTTGAGGATGTTTCCTCCTTCATCATTTCACCCTGGAAATCAAAAGCTGAACTCACCAGATCATATTGGTGGTTCTTCAGTGCCTGATAATATTTATGGTCATGTGAAACGTCACAGTTCAAAGGAAAATATCAAGATAGCCATTATTCTTGCTTCAGTTGGTGCTGCGGTGATGATTGTTTTTGTTTTCTTGGCTTATCATAGAACACAACTTAAAGAATTTCGTGGCCGAAGTGGCTTCGCTGGTCAAAATACTAGGAGGGATATCAAATCAGGAGGGCTTGTACGGCCTTCCCTCTTCAAGTTCCACCCAAATGCTCAGCCACCAGCAAGTTCATTGAGCTTTTCAAATGATCACTTGCTGACATCCAATTCAAGATCACTCTCTGGACAGTCAGAGTTTGTAACTGAAATTACTGAGCATGGCACACAGGGAATGGGAGCAGCTAGTTCAGCTTCTGTGAATCCAGATTTGATGGATAACCCTCCCATATCATCTGGAAGGAAGTCATCTCCTGGTTCCCCGTTATCTTCCTCCCCCCGTTTTATTGAAGCACAAGAAAAACCAGTAATGTTGGATGTGTATTCACCAGATCGCCTGGCTGGAGAGTTGCACTTCCTTGATTCTTCCCTGGCATTTACTGCAGAGGAATTATCTCGAGCTCCAGCTGAAGTTCTTGGCAGAAGTAGCCATGGTACTTTGTACAAAGCTACACTAGACAGTGGTCATATGTTGACTGTAAAGTGGTTACGTGTTGGATTGGTCAAACATAAGAAGGAATTTGCTAGAGAAGTTAAAAGGATTGGTTCTATGAGGCATCCTAACATTGTCCCATTGCGGGCATACTATTGGGGGCCCAGGGAACAAGAGAGGCTTCTTTTAGCTGACTATATACCTGGCGACAGCTTGGCCTTACATCTTTATGAGACAACACCCCGGAGGTACTCACCTTTGTCATTCAGCCAGAGATTAAGAGTTGCTGCTGAAGTTGCTCGATGCCTTCTATATCTACATGATCGAGGGCTTCCCCATGGGAATCTAAAACCAACAAATATATTATTAGCAGGCCCTGAATACAGTGCCCGTCTAACTGACTATGGTCTGCACCGCCTGATGACGCCTGCCGGAATTTCAGAGCAGATACTAAATCTTGGAGCACTTGGATACCGTGCTCCAGAACTTGCCTCTGCTAACAAACCAGTCCCATCATTTAAGGCAGATGTGTATGCACTTGGTGTGATCTTAATGGAATTATTAACGAGAAAAAGTGCAGGCGACATAATATCAGGTCAATCTGGGGCTGTTGATCTAACGGATTGGGTGAGGCTTTGTGAGCAGGAAGGACGTGTAATGGACTGTATTGACAGAGAAATTGCAGGCGATGAAGAATCTTCAAGAGAGATGGACGAATTGCTTGCAATATCGCTCAGGTGTATTCTCCCTGTAAATGAGAGGCCTCATATCAGACAAGTTTTAGACGATCTTTGTTCCATGTCGGCTTGA 3186 0.4328 MNSVPNFFVPVFSLCFLSLLFSGFASEAELRSLLEFKKGIDRDPIGRVFDSWKLSSLSDLNDCPHSWAGVACEDGTGNVTAVVLDGFSLGGELKFHTLLELKMLKNLSLSGNDFTGRLPPALGTLTTLQHLDLSNNKFYGPIPARINDLWGLNYLNLSKNNFKGGFPGGLYNLQQLRGLDLRSNQLWGNIGDVLSALRNVEHLDLSSNKFYGGLSLGTENVSGLANTVHFLNLSYNELNGPFFGGDSIALFRNLQVLDLGHNQIRGELPSFGSLPSLRVLRLDSNLLYGSIPEELLETSMSLEELDLSDNGFTGSIPSINSTSLNILNLSSNGLSGSLPTSLRKCTVMDLSRNMLDGDVSVMRNWEATFEVLDLSSNRLSGSFPNLTNQFEGLTTLALRNNSLVGTLPPNLGTYSKLSVVDFSLNELNGPIPVSLFTSTTLTSLNLSGNHFTGSIPLERSGASELIIMTPYRPMEYLDLSDNSLKGILPSDISRLGVLKLLNLARNDFSGQLPSELSKLVSLEYLDLSNNRFKGQIPDKLSSNLNVFNVSNNDLSGDVPDNLRMFPPSSFHPGNQKLNSPDHIGGSSVPDNIYGHVKRHSSKENIKIAIILASVGAAVMIVFVFLAYHRTQLKEFRGRSGFAGQNTRRDIKSGGLVRPSLFKFHPNAQPPASSLSFSNDHLLTSNSRSLSGQSEFVTEITEHGTQGMGAASSASVNPDLMDNPPISSGRKSSPGSPLSSSPRFIEAQEKPVMLDVYSPDRLAGELHFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAREVKRIGSMRHPNIVPLRAYYWGPREQERLLLADYIPGDSLALHLYETTPRRYSPLSFSQRLRVAAEVARCLLYLHDRGLPHGNLKPTNILLAGPEYSARLTDYGLHRLMTPAGISEQILNLGALGYRAPELASANKPVPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEQEGRVMDCIDREIAGDEESSREMDELLAISLRCILPVNERPHIRQVLDDLCSMSA 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0253 1061 SUPERFAMILY Protein kinase-like (PK-like) 784 1056 IPR011009 -
Acco13g0253 1061 Pfam Leucine rich repeat 475 532 IPR001611 GO:0005515
Acco13g0253 1061 Pfam Leucine rich repeat 152 210 IPR001611 GO:0005515
Acco13g0253 1061 FunFam Leucine-rich repeat receptor protein kinase EMS1 467 561 - -
Acco13g0253 1061 SUPERFAMILY L domain-like 227 556 - -
Acco13g0253 1061 ProSiteProfiles Leucine-rich repeat profile. 253 275 IPR001611 GO:0005515
Acco13g0253 1061 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 245 465 - -
Acco13g0253 1061 Pfam Leucine Rich repeats (2 copies) 253 291 IPR025875 -
Acco13g0253 1061 MobiDBLite consensus disorder prediction 706 743 - -
Acco13g0253 1061 SUPERFAMILY L domain-like 53 355 - -
Acco13g0253 1061 Gene3D Ribonuclease Inhibitor 218 582 IPR032675 -
Acco13g0253 1061 Gene3D Transferase(Phosphotransferase) domain 1 860 1061 - -
Acco13g0253 1061 FunFam Nuclear pore complex protein NUP107 26 192 - -
Acco13g0253 1061 PANTHER OS07G0626500 PROTEIN 12 1059 - -
Acco13g0253 1061 ProSiteProfiles Leucine-rich repeat profile. 301 323 IPR001611 GO:0005515
Acco13g0253 1061 Gene3D Phosphorylase Kinase; domain 1 763 858 - -
Acco13g0253 1061 MobiDBLite consensus disorder prediction 706 742 - -
Acco13g0253 1061 Gene3D Ribonuclease Inhibitor 25 216 IPR032675 -
Acco13g0253 1061 ProSiteProfiles Protein kinase domain profile. 781 1061 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0253 1061 Pfam Leucine Rich repeat 438 453 IPR001611 GO:0005515
Acco13g0253 1061 Pfam Leucine Rich repeat 299 314 IPR001611 GO:0005515
Acco13g0253 1061 FunFam Pollen receptor-like kinase 1 859 1061 - -
Acco13g0253 1061 Pfam Protein kinase domain 785 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0253 1061 FunFam Leucine-rich repeat receptor-like protein kinase 766 858 - -
Acco13g0253 1061 SMART LRR_typ_2 251 273 IPR003591 -
Acco13g0253 1061 SMART LRR_typ_2 274 298 IPR003591 -
Acco13g0253 1061 SMART LRR_typ_2 390 414 IPR003591 -
Acco13g0253 1061 SMART LRR_typ_2 519 543 IPR003591 -
Acco13g0253 1061 SMART LRR_typ_2 125 149 IPR003591 -
Acco13g0253 1061 SMART LRR_typ_2 173 197 IPR003591 -
Acco13g0253 1061 Pfam Leucine rich repeat N-terminal domain 27 72 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0253 Acco-ChrAcco13 1757592 1762447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0253 65 605 Receptor kinase-like Gene Family AT5G46330 30.551 2.87e-50 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Acco13g0253 Pkinase 2.5e-29 CL0016