Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0203 ATGCCAGTGGACATGGACTCCCTAATCGTGCTTTTACTATTGGCTTGCTTATGCTCTTTTGTAACTTCTGATTTTCAAGGAGATGCATTATTTGCACTGAAGTTATCGTTGAATGCTTCGGCTAATCAGCTTACTGATTGGAATCAAAATCAAGTAAACCCTTGTACTTGGTCCCGTGTTTACTGTGACCCAAATTCCAATGTTGTTCAAGTTTCATTAGCATTGATGGGATTTACCGGGATCTTGACCCCAAGAATTGGAGCTCTAAAAAGTCTTGAAACTCTTTCATTGCAAGGGAATGGCATCACTGGTGAAATACCAAAAGAATTGGGAAATCTGACTAGTTTAACCAGACTTGATCTGGAAAACAACAAATTAAGGGGAGAAATACCATCTACCCTTGGTAATCTTCCAAGGCTTCAGTTCTTGACTTTGAGTCAAAACAATCTCAGTGGGAATATTCCTGAATCACTTGGCAGCCTTCCTAGCTTGATCAATGTTCTGCTGGACTCAAATAATCTCACTGGTCGAATTCCTGAGCGGTTATTCAATGTTCCTAAATACAATTTCAGTGGAAATAACTTAAATTGTGACATGAATTACCGCCACCCTTGTGCCTCTGATAATGCAGATCAAGGTTTGTCCCATAAGCCGAAAATTGGCCTTATAGTTGGAATTATTGTTGGGTTAATCACTGTAATGTTTCTCTGTGGTCTGCTGTTCTTCTGGTGTAAGAGTAGACGCAAGGGCTACAGACGAGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGATCGCCGAATTGCATTTGGTCAACTAAAAAGATTTGCTTGGAGAGAACTACAGATAGCCACTGACAACTTCAGTGAGAAAAATGTTCTGGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTCCTTGCAGATAACACTAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGGGGGGGATGCTGCTTTCCAGCGGGAAGTCGAGATGATAAGTGTAGCTGTCCATCGGAATCTGTTACGGCTGATTGGATTTTGTACTACTCCAACTGAACGTCTTCTAGTTTATCCCTTCATGCAGAACTTGAGTGTTGCCTATCGACTAAGAGAGCTGAAACCTGGAGAGCCTGTTTTAGACTGGCCAACAAGAAAGCGAGTAGCTTTAGGCACAGCCCGCGGCCTAGAATATCTTCATGAGCATTGCAATCCTAAGATTATCCATCGGGATGTGAAAGCTGCAAATGTATTACTAGATGAAGATTTTGAGGCAGTTGTTGGTGACTTTGGTTTGGCAAAGTTAGTTGATGTTCGAAAAACTAATGTGACAACTCAAGTTCGTGGAACAATGGGCCACATAGCTCCTGAATATTTGTCCACCGGGAAATCTTCTGAAAGGACAGATGTTTTTGGTTATGGCATTATGCTTTTGGAGCTTGTTACTGGTCAGCGGGCAATTGACTTTTCACGTTTGGAAGAGGAGGATGATGTGCTATTACTTGATCATGTTAAGAAACTAGAAAGGGAAAAACGTCTAGATGCCATTGTCGACAGCAACCTAAATAAAAATTACAACATACAAGAAGTTGAAATGATGATACAAGTTGCATTACTCTGCACCCAAGCTTCACCAGAGGACCGCCCAGCGATGTCAGAGGTTGTTAGAATGCTAGAAGGAGAAGGTCTGGCTGAAAGGTGGGAGGAATGGCAACATGTGGAGGTTACTCGGAGGCAAGAATATGAGAGACTGCAAAGAAGATTTGATTGGGGAGAAGATTCAGCTCATAACCAAGATGCCATTGAGTTGTCTGGGGGGAGATGA 1833 0.4195 MPVDMDSLIVLLLLACLCSFVTSDFQGDALFALKLSLNASANQLTDWNQNQVNPCTWSRVYCDPNSNVVQVSLALMGFTGILTPRIGALKSLETLSLQGNGITGEIPKELGNLTSLTRLDLENNKLRGEIPSTLGNLPRLQFLTLSQNNLSGNIPESLGSLPSLINVLLDSNNLTGRIPERLFNVPKYNFSGNNLNCDMNYRHPCASDNADQGLSHKPKIGLIVGIIVGLITVMFLCGLLFFWCKSRRKGYRREVFVDVAGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDSNLNKNYNIQEVEMMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVTRRQEYERLQRRFDWGEDSAHNQDAIELSGGR 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0203 610 FunFam Somatic embryogenesis receptor-like kinase 1 364 581 - -
Acco13g0203 610 Gene3D Ribonuclease Inhibitor 24 215 IPR032675 -
Acco13g0203 610 Gene3D Transferase(Phosphotransferase) domain 1 364 581 - -
Acco13g0203 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Acco13g0203 610 SUPERFAMILY L domain-like 26 197 - -
Acco13g0203 610 ProSiteProfiles Protein kinase domain profile. 287 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0203 610 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Acco13g0203 610 SUPERFAMILY Protein kinase-like (PK-like) 267 562 IPR011009 -
Acco13g0203 610 SMART serkin_6 287 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0203 610 FunFam Putative LRR receptor-like serine/threonine-protein kinase 23 207 - -
Acco13g0203 610 FunFam Somatic embryogenesis receptor kinase 1 256 363 - -
Acco13g0203 610 Pfam Leucine Rich repeats (2 copies) 90 128 IPR025875 -
Acco13g0203 610 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
Acco13g0203 610 Gene3D Phosphorylase Kinase; domain 1 256 363 - -
Acco13g0203 610 Pfam Protein kinase domain 288 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0203 610 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0203 Acco-ChrAcco13 1425866 1431177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0203 5 610 Receptor kinase-like Gene Family AT5G10290 79.043 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Acco13g0203 Pkinase 3.1e-43 CL0016