LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco13g0193	ATGGAACGGTATGATATAATCAAAGATATTGGGTCAGGCAACTTTGGGGTGGCGAAGCTGGTGAGGGATAAACGGAGTGGAGAATTGTATGCTATCAAGTTTATTGAGAGAGGCATAAAGATTGATGAGCATGTGCAAAGGGAGATCATAAACCATAGATCCTTGAAGCATCCCAACATCATTCGATTCAAAGAGGTGTTGCTCACTCCAACCCATCTTGCCATAGTGATGGAATATGCCTCTAGAGGAGAACTCTTTCAAAGAATATGTAATGCGGGTAGATTCAGTGAAGATGAGGCAAGATATTTCTTTCAGCAGTTGATTTCTGGAGTCAGCTATTGCCATTCAATGGAAATTTGCCACAGAGATCTTAAACTAGAAAACACCCTCTTAGATGGAAGCACAGCACCGCGACTCAAAGTTTGCGACTTTGGCTACTCAAAGTCATCAGTTCTGCACTCTCAGCCCAAATCTACTGTAGGAACCCCTGCTTACATTGCACCAGAGATTTTGTCACGAAGGGAATATGATGGAAAGGTTGCAGATGTTTGGTCTTGTGGTGTGACCTTATATGTCATGCTGGTTGGTGCCTATCCTTTTGAAGATCATGAAGATCCTAAAAACTTCAGAAAAACGCTTCAGCGAATTCTCAGCGTCCACTATTCTATACCAGACTATGTTCGCATCTCAAAAGAGTGTAAACACCTTCTATCTAGAATATTCGTGGCCGACCCGGAGAAGAGAATAACGATCCCAGAAATCAAAATGCAACCGTGGTTCCTGAAGAACTTGCCACTGGAATTTATGGACGGAGGCAGGCAAAGTGGCATACAAGAAGATTTGTATGTGAACGATTCATGCGGGAGGCAGAGCATCGAAGAGATATCGAGTATAATTCAAGAAGCTAGAAAAACAGGGGATCAAGGCCAAAAAGTTGGCGGACATTTCGTTGGAAGTGGAAGTATGGATCTTTATGAGATGGATGCTGATGCTGACATTGATGATTTCGAGACAAGTGGTGATTTTGTCTGCGCTATGTGA	1041	0.4284	MERYDIIKDIGSGNFGVAKLVRDKRSGELYAIKFIERGIKIDEHVQREIINHRSLKHPNIIRFKEVLLTPTHLAIVMEYASRGELFQRICNAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSTAPRLKVCDFGYSKSSVLHSQPKSTVGTPAYIAPEILSRREYDGKVADVWSCGVTLYVMLVGAYPFEDHEDPKNFRKTLQRILSVHYSIPDYVRISKECKHLLSRIFVADPEKRITIPEIKMQPWFLKNLPLEFMDGGRQSGIQEDLYVNDSCGRQSIEEISSIIQEARKTGDQGQKVGGHFVGSGSMDLYEMDADADIDDFETSGDFVCAM	346

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco13g0193	346	PANTHER	SERINE/THREONINE KINASE	2	274	-	-
	Acco13g0193	346	FunFam	Serine/threonine-protein kinase SAPK2	1	79	-	-
	Acco13g0193	346	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
	Acco13g0193	346	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	119	131	IPR008271	GO:0004672\|GO:0006468
	Acco13g0193	346	FunFam	Serine/threonine-protein kinase SRK2E	80	268	-	-
	Acco13g0193	346	SMART	serkin_6	4	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco13g0193	346	CDD	STKc_SnRK2	3	259	-	-
	Acco13g0193	346	Gene3D	Transferase(Phosphotransferase) domain 1	81	266	-	-
	Acco13g0193	346	Gene3D	Phosphorylase Kinase; domain 1	1	79	-	-
	Acco13g0193	346	SUPERFAMILY	Protein kinase-like (PK-like)	2	265	IPR011009	-
	Acco13g0193	346	ProSiteProfiles	Protein kinase domain profile.	4	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco13g0193	346	Pfam	Protein kinase domain	4	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco13g0193	Acco-ChrAcco13	1379098	1381715	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco13g0193	3	270	CBL-interacting serine-threonine protein kinases	AT4G24400	41.877	5.02e-67	215

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Acco13g0193		Pkinase	1.8e-70	CL0016