Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco13g0111 | ATGATATGCGCAGCGATCGCCACTCTCGGCAAAGGAAAGGGCTGCACCAAGAATGCCATCGGAAAGTTCATTGAGCAAAACTATCAGGGCCTTCCTTCAGACCACGACAGCATGCTCATTTACAATTTGAATGTCTTGGCAAGCAATGGTCGACTTGTTATGGTCAATAACTCTTTCCGGCTCCGTAACTCTGATGCTTCCTCTTCTACCTCCCCAAGACAACCCGTTCGATCCCGCAAGCGCAAGCTCGACCAGTCGCCGCCTGATGTTCCGCCAAAAGCCGGCCCTTCGAAAGGACGTGGGCGTCCCCGCAAGAAACCAAAGGAGGACGACACAACCGCCGTCCCCGTCCCTTTTGTGAGTTATGCCCCCCCTCTCGATTCCCCTGATGTGGTGCCACCTTCGGGAGCTTCACCACAAGCTGTTGGAGTTGGTAGTAGTGGAAGGATAAGGACACGCCAAGATTCCGCCAGAAGGTCTGCCGGCCGGCCAAAGAAGGAGCAGGGAACTTCTGTTGAGGAGGAGTTGAGGAGAAAACTTGAACATTTTCAATCAAAAATCAATCAATATATTCGTGAGATCAAGTCCCAATTTACCATTGAGAGTCCAATCGGAGTAATTGCTGCAATTCAAGGATTAGAAAGACTGGCAAAAATGGATCTTGATGGGCCATTAGCAAATGAAACGCAACAACTGCCGCCACAGCAATAG | 711 | 0.5049 | MICAAIATLGKGKGCTKNAIGKFIEQNYQGLPSDHDSMLIYNLNVLASNGRLVMVNNSFRLRNSDASSSTSPRQPVRSRKRKLDQSPPDVPPKAGPSKGRGRPRKKPKEDDTTAVPVPFVSYAPPLDSPDVVPPSGASPQAVGVGSSGRIRTRQDSARRSAGRPKKEQGTSVEEELRRKLEHFQSKINQYIREIKSQFTIESPIGVIAAIQGLERLAKMDLDGPLANETQQLPPQQ | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco13g0111 | 236 | Gene3D | - | 1 | 82 | IPR036388 | - | |
| Acco13g0111 | 236 | SUPERFAMILY | "Winged helix" DNA-binding domain | 1 | 70 | IPR036390 | - | |
| Acco13g0111 | 236 | PANTHER | HISTONE H1 | 1 | 168 | - | - | |
| Acco13g0111 | 236 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 1 | 63 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Acco13g0111 | 236 | Pfam | linker histone H1 and H5 family | 1 | 60 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Acco13g0111 | 236 | MobiDBLite | consensus disorder prediction | 152 | 174 | - | - | |
| Acco13g0111 | 236 | SMART | h15plus2 | 1 | 58 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Acco13g0111 | 236 | MobiDBLite | consensus disorder prediction | 62 | 174 | - | - | |
| Acco13g0111 | 236 | Coils | Coil | 173 | 193 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco13g0111 | Acco-ChrAcco13 | 850838 | 852196 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco13g0111 | 1 | 69 | Single Myb Histone (SMH) Gene Family | AT1G49950 | 42.029 | 7.81e-08 | 50.1 |