Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0096 ATGTCAGACCTCGATCCGCCCAAGAAAGTGGCCGATAGGTATCTCAAGCGTGGAGTCCTCGGTGAAGGTACCTATGGAGTAGTGTACAAAGCTATTGATACCCAGACAGGACAGACAGTCGCAATTAAGAAAATCCGGCTTGGCAAGCAGAAGGAAGGGATAAATTTTACGGCCCTTAGAGAGATTAAAATACTTAAAGAGCTCAGTGATCCAAATATTATTGAGTTAATTGATGCTTTCCCGCATAAAGGCAATTTGCATCTTGCCTTTGAATTCATGGAGACGGATCTTGAAGCTGTTATAAGAGACCGGAATATTTTTCTTTCACCAGCTGATATAAAATCTTACCTTCAAATGACTCTGCAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAACCTAACAACTTGTTGATAGGGTCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCTCGAATCTTTGGGAGTCCAGGCCGAAGATTTACTCATCAGGTGTTTGCTCGGTGGTATAGATCGCCAGAGCTGTTATTTGGTACCAAGCAATATGGTTCAGCTGTAGATGTTTGGGCAGCAGCTTGTACATTTGCTGAACTACTTCTTCGTCGACCTTTTTTGCAGGGCTCAAGTGACATTGATCAATTAGGAAAGATTTTTGCAGCATTTGGGACGCCAACTCCTTCCCAGTGGTCGGATATGGTATACCTTCCCGACTATGTTGAATACCAATATGTTCCTGCCCCTCCTTTTCGTTCTTTATTTCCAACGGCAAGTGATGATGCTTTAGATCTGTTGTCAAAGATGTTTACCTATGATCCAAAAGCTAGAATTTCTGCTGCGCAGGCATTAGAGCACAGGTACTTTTCCTCAGCACCTCTGCCCACAGAACCAATCAAACTTCCTAGACCTGCCCCTAAAAAGGAATCTAGGGCTTCTGATTTCAATCCACATGAGGGTCCAACTGTACTATCACCCCCAAGAAAGTCTCGGAGGGTGATGCCAGGACGTGATGGGTTTGAAGAAAATTTATTGCGAGGAGACAATGTTGGTAATTTCAGGCAGACTACTGGTGATAATACAGGCAAGAATGAGCCAGCACCAATGTCAATAGATTTTTCTATCTTTGGATTAAAACCTCCAAATCGACCTACAATTAACAGTGCTGACAGATCGCATTTGAAGAGAAAGTTAGATCTAGAATTCCAGTAG 1227 0.4271 MSDLDPPKKVADRYLKRGVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGINFTALREIKILKELSDPNIIELIDAFPHKGNLHLAFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLQGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPGRRFTHQVFARWYRSPELLFGTKQYGSAVDVWAAACTFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWSDMVYLPDYVEYQYVPAPPFRSLFPTASDDALDLLSKMFTYDPKARISAAQALEHRYFSSAPLPTEPIKLPRPAPKKESRASDFNPHEGPTVLSPPRKSRRVMPGRDGFEENLLRGDNVGNFRQTTGDNTGKNEPAPMSIDFSIFGLKPPNRPTINSADRSHLKRKLDLEFQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0096 408 Pfam Protein kinase domain 17 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0096 408 SUPERFAMILY Protein kinase-like (PK-like) 9 300 IPR011009 -
Acco13g0096 408 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Acco13g0096 408 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0096 408 PANTHER CELL DIVISION PROTEIN KINASE 12 300 - -
Acco13g0096 408 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Acco13g0096 408 MobiDBLite consensus disorder prediction 354 369 - -
Acco13g0096 408 Gene3D Phosphorylase Kinase; domain 1 6 94 - -
Acco13g0096 408 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Acco13g0096 408 MobiDBLite consensus disorder prediction 300 408 - -
Acco13g0096 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Acco13g0096 408 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Acco13g0096 408 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0096 408 FunFam Cyclin-dependent kinase D-1 5 94 - -
Acco13g0096 408 MobiDBLite consensus disorder prediction 394 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0096 Acco-ChrAcco13 774549 778514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0096 7 408 Core Cell Cycle Gene Families AT1G18040 75.124 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Acco13g0096 Pkinase 2.6e-71 CL0016