Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0089 ATGCCTCATGCTGCAGATGCTTCAGAATCACGGCACATCAAATGCACAAGGCCCAGGACCCAATTCGCGCATCTCATTTCCCATACAGATCCCAACCCACAAATCCCTTCCCTGCCTCAATCCACTCGCTCCAAACCCACCATTTCCTCTATCCTCTCTGCCCCCTCCCACGACACTTTTGGTGAATCCCCACTGCCCGGACTCAACACCAACAAGAAGAAGCCCAGTTTCTCCGCCGCAACCTTCAGGGGATTCGGATGCACTGCGGGCGCCTCGCGCCAGGTATCGCTTCCGGCGGTCATTCGGACATCGGCTGATTGGCAACACACCAAAGCCAGAAAGAAGAAGCACAAGAGGGATGGTGCCGACAACTGTATGAGCGGTCAAGGCGTTCTTGATGGTTCAAATCCTGGTTCCGTTAGTTGTCTTGCTTTTCAAGATGCTTGGTGTGGCCCTGGAATTGGGTTTGCGGCGAATGTTGCTGCCCCTGCGGATTGCGTTGTCGTCAGGAAGACTGGCCCTACCAGAGGGAAGACTGATTTGGAGAAGCTGACCCACAGCCACGGCGAGCGATTAACGAGTCGCCCTGAGTCTTTTGGTACTGCTGGATCCTATCGCCATGTTCCACCTCCACTTCCTTCCTCTCGTAACTTTGCTGGGATGACGCTGCTTCAAGGAACTCTGGTGATGGGGGCAAGATTGAATTCTCGCGACCACTTTAGAGACTGGAGACTTGATATTGATAACATGTCTTATGAGCAATTGCTGGAGCTTGGTGAGAGAATTGGCTATGTGAACACTGGGCTTAAAGAAGATGAGATAGGACGTTACATTAGGAAATTTAAGCTTTCCAAGTTCAATGAGACTTCAAAACGTCAAGTTGACAACAAATGCAGCATTTGTCAGGAAGAATACGAAGCTGAGGATGAGGTGGGAAGGCTAAGTTGTAAACACGACTATCACTTTCAGTGTCTAAGGCAATGGCTCGCACACAAAAATTGCTGCCCTGTGTGTAAGCAAGAAGTTGCGAGTCGTCACTCCGGGGCCAAATGCTGA 1056 0.5085 MPHAADASESRHIKCTRPRTQFAHLISHTDPNPQIPSLPQSTRSKPTISSILSAPSHDTFGESPLPGLNTNKKKPSFSAATFRGFGCTAGASRQVSLPAVIRTSADWQHTKARKKKHKRDGADNCMSGQGVLDGSNPGSVSCLAFQDAWCGPGIGFAANVAAPADCVVVRKTGPTRGKTDLEKLTHSHGERLTSRPESFGTAGSYRHVPPPLPSSRNFAGMTLLQGTLVMGARLNSRDHFRDWRLDIDNMSYEQLLELGERIGYVNTGLKEDEIGRYIRKFKLSKFNETSKRQVDNKCSICQEEYEAEDEVGRLSCKHDYHFQCLRQWLAHKNCCPVCKQEVASRHSGAKC 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0089 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 59 343 IPR045191 GO:0061630
Acco13g0089 351 SMART ring_2 298 338 IPR001841 -
Acco13g0089 351 Pfam Ring finger domain 296 339 IPR001841 -
Acco13g0089 351 ProSiteProfiles Zinc finger RING-type profile. 298 339 IPR001841 -
Acco13g0089 351 MobiDBLite consensus disorder prediction 108 129 - -
Acco13g0089 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 348 IPR013083 -
Acco13g0089 351 MobiDBLite consensus disorder prediction 28 48 - -
Acco13g0089 351 FunFam E3 ubiquitin-protein ligase rnf12-A 265 344 - -
Acco13g0089 351 SUPERFAMILY RING/U-box 292 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0089 Acco-ChrAcco13 709317 711750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0089 11 253 C3H Transcription Factor Family AT1G73760 35.587 3.63e-31 117