Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0078 ATGGAAACGCCGTTGACGGGACTGCAGCATTTGGAAGGCAGAGGAGGAGTGACCGTGCTTTCCGATTCTGCGAACAAGGTCGATTCCTCCTCGCCATCTACTTCGGCCACCAATGGTGTCTTGAACTACTCTGAACCGGAGTCCCCAATCTTGATTTTCTTATTATTTCATAAGGCGATTCGAAAAGAGCTTGATGCTCTTCACCAGTTAGCTATGGCATTTGCAACGGGCAACCGCTCTGATATTCAGCCCCTCCTCCAGCGCTATCATTTTGTTAGATCCATTTATAGACAACACTCCAATGCTGAAGATGAGCTTATGCTTCTTTCTGTCCTTTATGCTCAACTTGTGGGACCTGCCTACTCTCCTGAAGTGCCTTTTGTTTTATTTGGCATTGCTGCTTATGCTTTTCAGCTGCGCTCCAAAGTTCTTAGGGAAATATATTCTGAACATCTGCTAAATTCTACCGTTCAAAATGATGAAAGTTTTTCAAAGGAGTTAACATCCTGCACGGGAGCTCTGCAGACATCAATTAATCAACACATGGCTAAGGAAGAGGAGCAGGTATTTCCATTGCTTATTGAGAAATTTTCAATAGACGAACAGGCATCTCTAGTTTGGCAGTTTCTGTGCAGCATTCCTGTCAATACTATGACAGAATTTCTTCCCTGGCTGTCAAAATCTATATCACCGGATGAATCTAGAAATCTGCGGAAGTGCTTAAGCAAGATATTACCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCACTTGGATGGATGGTGGTGTTAACACAATTGAAAGTTTTGCACATCATTCTCATATTCGGTGTAGTTCTAGCTCATTAACCCATCTGACTGGGAAAGTAAACTGTGCTTGTGATTCCGCAGCAACTGGGGAAAAGAAACTTTCTGAATCTATTCTAGATGTTTCTGATGCCACTGAAACACCTCCTATTGATGAAATATTGCTCTGGCATAATGCGCTAAAAAAAGAGTTGAGAGAAATAGCAGGGGAGACCAGAAAGATACAACTTTCTGGAAATTTTACTAATTGGTCAGCTTTTAATGAAAGGTTGCAGTTTATTGCTGAAGTTTGTGTATTTCACAGTATTGCTGAGGACAAGTTTATATTTCCTGCTGTAGATGGAAAACTTTCTTTCTTCCAGGAGCATACTGAAGAAGAAAGCCAATTTAATAACTTCCGGCAATTGATTGAAGGTATTCAGGGTGAAGGAGCAACATCCAATTTAGATGCTGATTTTTATTCCAAGTTATGCTCATGTGCTGATCATATAATGGAAACCATACATAAGCATTTCTGCAAAGAAGAAGTTCAGGTTCTTCCACTTGCTCGGGAGTTTAGCTTCAAAAAACAACGTGAACTTTTGTACCAAAGCTTGTGTATGATGCCTCTAAAATTGATTGAACGTTCCCTACCCTGGTTGGTAGGATCATTAACTGAAGATGAAGCAAAGATATTTTTGAAAAACATGCGTCTGGCAGCTCCCCCAAAAGATTCTGCTTTAGTCACACTCTTCTGTGGTTGGGTTTGCAAGGCTCGTAAGGAGGGTATGTGCTTGTCTTCAAGTGTATCAGGTTGCTGTCCTGCTAAAAATCTTACTGATATTGAAGAAAATATTTTCCAGTCATCCTGTGCTTGTGCTTCTGCATTATCTGAAAATGGTTGCTCAGTATCAACTGAATCAGATGAGATCAAAAGACCATTCAAGCAAAATATATTGGAGTTCTGCAAGAATGGAGATATACCTCAAACTTTAGAAACCGAAAGTATCCAAAAGCAACGTTGTAGTGCTCAGTCTTGTTATGTGCCGGGTTTAGGAGTAAGCAGTAATAATCTGGGCCTGAGCTCTCATTCCACTACCAAGTCCATACGCTCCTTATCTTTCATCTCTTCTCCTCCATCTCTTAATTCCAGTCTTTTCATATGGGAAACCGAAAACAACTTTTGTGATGCTACCTCTTCAGAACGACCAATTGATACTATTTTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATTTAGATGTTGAATCTGGAAAGCTTAGCACTGGTGACAAGACAATTCTTCATCAATTTACTGGAAGATTTCGCCTTTTATGGGGTTTACATAGAGCTCACAGTAATGCTGAAGATGACATAGTTTTTCCAGCATTGGAATCCAAAGAGGCACTTCATAACGTGAGTCATTCATACATGCTGGATCATAGGCAGGTAGAAAAATTATTCGGGGATATATCCCTTGTTCTTTCCGAGCTTTCTGTTCTTCAAGAAAGTTTGCTGACACCCAATGTTTCAGAGGATACATGTAATTTTGAAACTTCTGATGCCACTGTGAGTGATAATATACGAAAATATAATGAGTTAGCAACTAAACTTCGAGGGATGTGCAAATCCATAAGGGTGACCCTGGATCAGCATATTTTCAGAGAAGAACGTGAGCTTTGGCCATTGTTTTGGAGACATTTCACTGTAGAAGAACAAGACAGGATAGTTGGTCGAATAATCGGAACTACTGGTGCTGAAGTGCTCCAGTCAATGTTACCATGGGTAACTTCCGCGCTGACTTCGGATGAACAGAACAAAATGATGGACATATGGAGGCAGGCTACCAAGAACACTATGTTCAACGAATGGCTTAGTGAATTCTCGAAAGAGAGTCCGTGTGAAACATCAGAGCATAGGACATCCCAAAGAGGTACTGAATATCAAGAAAACTTGGACCAGAATGATCAGATTTTTAAGCCAGGTTGGAAAGATATATTTCGGATGAATCAGAGTGAGCTTGAGTCAGAGATACGGAAGGTGTATCAGGATTCTACCCTTGACCCAAGGAGAAAGGCATATCTTGTGCAAAATCTATTGACCAGTCGCTGGATTGCTTCCCAGCAGATGTTACCCAAAGCCGTTGCTGGAGAATCTTCTAATGGCGAAGAAATGGAAGGAAGATCGCCATCATTTTGGGACCTGGGGAAAAATGAATTTGGATGTGAGCATTATAAGAGAAACTGCAAAATTCGAGCTGCATGTTGTGGCAGGCTATTTACATGCAGATTTTGCCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGTATGAATGTATATCATTGCCCATTTTGCAATGTATGCCGTGTTGGGAGAGGGCTTGGCATTGATTATTTTCATTGTATGAAATGCAATTGCTGTCTGGGGATTAAATCAGAATCTCACAAATGCTTGGAGAAAAGTTTGGAAGTGAACTGTCCAATTTGTTGTGACTTCTTATTCACATCCAGTGCTCCAGTCAGAGCTCTACCTTGTGGCCATTATATGCATTCAGCTTGCTTTCAGGCGTATACTTGTAGTCACTACGCATGTCCAATTTGCAGCAAGTCAATGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCTTTGTTGGCTGCTGAGGTGCTTCCTGAAGATTACACGGACCGGTATCAGGATATACTGTGCAATGATTGTGATCGAAAGGGCTCTTCACGCTTCCACTGGTTGCATCACAAATGTGGTTTTTGTGGCTCATACAATACCCGTGTAATCAAGTCTGAGGCAACAACAAATTCCATCTGCTGCTAG 3645 0.4096 METPLTGLQHLEGRGGVTVLSDSANKVDSSSPSTSATNGVLNYSEPESPILIFLLFHKAIRKELDALHQLAMAFATGNRSDIQPLLQRYHFVRSIYRQHSNAEDELMLLSVLYAQLVGPAYSPEVPFVLFGIAAYAFQLRSKVLREIYSEHLLNSTVQNDESFSKELTSCTGALQTSINQHMAKEEEQVFPLLIEKFSIDEQASLVWQFLCSIPVNTMTEFLPWLSKSISPDESRNLRKCLSKILPEEKLLQKVIFTWMDGGVNTIESFAHHSHIRCSSSSLTHLTGKVNCACDSAATGEKKLSESILDVSDATETPPIDEILLWHNALKKELREIAGETRKIQLSGNFTNWSAFNERLQFIAEVCVFHSIAEDKFIFPAVDGKLSFFQEHTEEESQFNNFRQLIEGIQGEGATSNLDADFYSKLCSCADHIMETIHKHFCKEEVQVLPLAREFSFKKQRELLYQSLCMMPLKLIERSLPWLVGSLTEDEAKIFLKNMRLAAPPKDSALVTLFCGWVCKARKEGMCLSSSVSGCCPAKNLTDIEENIFQSSCACASALSENGCSVSTESDEIKRPFKQNILEFCKNGDIPQTLETESIQKQRCSAQSCYVPGLGVSSNNLGLSSHSTTKSIRSLSFISSPPSLNSSLFIWETENNFCDATSSERPIDTIFKFHKAIRKDLEYLDVESGKLSTGDKTILHQFTGRFRLLWGLHRAHSNAEDDIVFPALESKEALHNVSHSYMLDHRQVEKLFGDISLVLSELSVLQESLLTPNVSEDTCNFETSDATVSDNIRKYNELATKLRGMCKSIRVTLDQHIFREERELWPLFWRHFTVEEQDRIVGRIIGTTGAEVLQSMLPWVTSALTSDEQNKMMDIWRQATKNTMFNEWLSEFSKESPCETSEHRTSQRGTEYQENLDQNDQIFKPGWKDIFRMNQSELESEIRKVYQDSTLDPRRKAYLVQNLLTSRWIASQQMLPKAVAGESSNGEEMEGRSPSFWDLGKNEFGCEHYKRNCKIRAACCGRLFTCRFCHDNVSDHSMDRKATSEMMCMNVYHCPFCNVCRVGRGLGIDYFHCMKCNCCLGIKSESHKCLEKSLEVNCPICCDFLFTSSAPVRALPCGHYMHSACFQAYTCSHYACPICSKSMGDMAVYFGMLDALLAAEVLPEDYTDRYQDILCNDCDRKGSSRFHWLHHKCGFCGSYNTRVIKSEATTNSICC 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0078 1214 CDD Hr-like 52 191 - -
Acco13g0078 1214 Pfam Hemerythrin HHE cation binding domain 319 451 IPR012312 -
Acco13g0078 1214 Pfam Hemerythrin HHE cation binding domain 52 193 IPR012312 -
Acco13g0078 1214 Pfam Hemerythrin HHE cation binding domain 665 826 IPR012312 -
Acco13g0078 1214 CDD RING-H2_Pirh2-like 1096 1139 - -
Acco13g0078 1214 SUPERFAMILY Zinc hairpin stack 1048 1090 IPR037275 -
Acco13g0078 1214 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1049 1207 - -
Acco13g0078 1214 Gene3D nmb1532 protein domain like 659 882 - -
Acco13g0078 1214 FunFam Zinc finger protein BRUTUS 660 890 - -
Acco13g0078 1214 CDD Hr-like 667 825 - -
Acco13g0078 1214 Pfam Zinc-ribbon 1144 1201 IPR039512 -
Acco13g0078 1214 SUPERFAMILY CHY zinc finger-like 1000 1058 IPR037274 GO:0008270
Acco13g0078 1214 ProSiteProfiles Zinc finger CTCHY-type profile. 1023 1096 IPR017921 -
Acco13g0078 1214 FunFam Zinc finger protein-related isoform 1 1092 1141 - -
Acco13g0078 1214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1090 1141 IPR013083 -
Acco13g0078 1214 Gene3D nmb1532 protein domain like 48 211 - -
Acco13g0078 1214 Gene3D nmb1532 protein domain like 320 466 - -
Acco13g0078 1214 Gene3D - 1168 1210 - -
Acco13g0078 1214 Pfam CHY zinc finger 1005 1076 IPR008913 GO:0008270
Acco13g0078 1214 SUPERFAMILY RING/U-box 1095 1142 - -
Acco13g0078 1214 CDD Hr-like 320 449 - -
Acco13g0078 1214 ProSiteProfiles Zinc finger RING-type profile. 1097 1139 IPR001841 -
Acco13g0078 1214 ProSiteProfiles Zinc finger CHY-type profile. 998 1077 IPR008913 GO:0008270
Acco13g0078 1214 SMART ring_2 1097 1138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0078 Acco-ChrAcco13 644957 652911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0078 1 1206 C2H2 Transcription Factor Family AT3G18290 58.842 0.0 1434