Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0064 ATGGCTGACGTCTCCCAACTTCCTTGCGATTGTGACGGTGTCTGTATGATCTGCCAGGTGCTGCCGGCAGACGAGGAGAAGTTGACGTGCAAAACCTGCGCGACCCAATGGCATGTTACCTGTCTCTCCAATCCTCTGGCTACCATGGCCGAGACGGTTCAGTGGGAATGCCCCGATTGCTGTACTCCGCCATCTGATTTTCCGCCGGTAACTATTGGCAAAGTCGTACTCGACGGGGCTAATGACTTGAGGGCTGCGATCCGAGCCATCGAAGCTGACGCTTCTCTCTCGGATTTGGACAAGGCGAAGAAACGCCAGATGCTCATGAGTGGAACGGCTGCGCCGGAGGCAGACGAAGGTGGCGTGGAGAATGAGGTAGAAGGCCAAGCGAAGGATGTCTTGGATATCCTCAGCGGGGCTTTGAACTGCTCCTTCTGCATGAAGTTGCCCGAGAGGCCCGTCACGACTCCTTGCGGGCATAATTTCTGTCTGAAATGCTTCCAGAAATGGACTGGGCAAGAAAAACTAATATGTGCAAAGTGCCGATGCGGTATCCCCTCAAAAATGGCAAGCCAGCCCCGTATAAATTCTGCATTAGCTATTGCTATTCGCATGGCCAAAATATCCAAAGACACTGGTTCTGGAGAAGCTTCTAAAGCTTGCCATTTTGTGCACAATCAAGATAGGCCAGAGAAGGCATATACAACAGAGCGGGCCCAGAGGAAGGGCAACGCAAATGCAGCTAGCGGTAAGATTTTTGTAACTGTGCCTCAGGATCATTTTGGTCCAATCCCTGCTGAGAATGTTCCAGGGAGGAATCAAGGTGTGCTGGTTGGCGAATGTTGGGTACATAGGCTTGAATGCCGACAGTGGGGTGTTCACCTCCCTCCTGTAAGTGGTATCGCTGGACAGTCAAAATATGGTGCACAATCAGTAGTTCTTTCTGGCGGTTACGTTGATGATGAGGATCATGGAGAATATTTTCTTTACACAGGAAGTGGCGGTAAAGACCTGAGTGGTAATAAAAGAACGAACAAAGAACATTCTTTTGATCAGAAGTTTGAGAAGTCTAATTTAGCTCTCAAAGTTAGTTGTTTGAGAGGTTATCCGGTTCGAGTGGTGAGATCCCATAAAGAGAAACGCTCTTCCTATGCCCCCGAGAAAGGGTTTCGGTATGATGGGGTATACAGAATCGAGAAATGTTGGCAGACATTCGGAATGCAGGGATTCAAAGTTTGCCGGTATTTATTTGTTAGATGTGACAATGAACCTGCTCCATGGACGAGGCATGTTGATGACCATGGTGATCGCCAAAGACCCTTGCCAGTAATTTCGGAATTGGAAAAGGCTATAGGCATAATTGAACGAACGGAGAGTCCATCATGGGGTTTCGATGAGGAAGAATCTTGCTGGAAGTGGATGAAACCACCGCCGCCCAGTCGAATGTCCGTACAAGGTTCAAGGAGAGGGATAAGAAAAACCCAGAATAGGTATTGGGAAAGATTACTGAAAGAATTTGGTTGCCTTAGTTGCAAGCAAGTTATGGCTTCTCCAGTTACGACGCCCTGTGCTCATAATTTCTGCCAGTCATGTGTGGAAGGGGCATTTGCGGGTCGGTCTTTGGTAAGGGACAGAAACAGGGGTGGAAGATCGCTTCGGTCTAAAAAAAATGTGATGAAATGTCCTGCTTGCTCCACTGACATCGCGGATTTTCTTCAGAACCTTCAGGTTAATACAGAGTTGAAGGGTTTAATTGAAACACTGAAAGCTAAAGCTGAAGAAAATGGAGATTCGGCGGATGGAGATGGAGATGAGGAAGCAGATGGAGCAGAGGAAGACTGTGATGATACTGATGAAGATGAGGAAGCAGATGAGGAATCCGATGGCCAGGAAACAGAGTCAAGAGAACTTGAAGTGACCAATGAGGAGGCAGATGCTGGAGCCAATGGCAATGATAAAAGAAAGAGATATGATGCTGAACAAGTTTCCATGAAAAGGAATAGAGGAAAGCCCTAA 2016 0.4777 MADVSQLPCDCDGVCMICQVLPADEEKLTCKTCATQWHVTCLSNPLATMAETVQWECPDCCTPPSDFPPVTIGKVVLDGANDLRAAIRAIEADASLSDLDKAKKRQMLMSGTAAPEADEGGVENEVEGQAKDVLDILSGALNCSFCMKLPERPVTTPCGHNFCLKCFQKWTGQEKLICAKCRCGIPSKMASQPRINSALAIAIRMAKISKDTGSGEASKACHFVHNQDRPEKAYTTERAQRKGNANAASGKIFVTVPQDHFGPIPAENVPGRNQGVLVGECWVHRLECRQWGVHLPPVSGIAGQSKYGAQSVVLSGGYVDDEDHGEYFLYTGSGGKDLSGNKRTNKEHSFDQKFEKSNLALKVSCLRGYPVRVVRSHKEKRSSYAPEKGFRYDGVYRIEKCWQTFGMQGFKVCRYLFVRCDNEPAPWTRHVDDHGDRQRPLPVISELEKAIGIIERTESPSWGFDEEESCWKWMKPPPPSRMSVQGSRRGIRKTQNRYWERLLKEFGCLSCKQVMASPVTTPCAHNFCQSCVEGAFAGRSLVRDRNRGGRSLRSKKNVMKCPACSTDIADFLQNLQVNTELKGLIETLKAKAEENGDSADGDGDEEADGAEEDCDDTDEDEEADEESDGQETESRELEVTNEEADAGANGNDKRKRYDAEQVSMKRNRGKP 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0064 671 SUPERFAMILY RING/U-box 500 590 - -
Acco13g0064 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 62 IPR013083 -
Acco13g0064 671 Pfam RING-type zinc-finger 508 562 IPR027370 -
Acco13g0064 671 FunFam Predicted protein 99 208 - -
Acco13g0064 671 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Acco13g0064 671 SMART PHD_3 14 61 IPR001965 -
Acco13g0064 671 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 242 439 - -
Acco13g0064 671 Gene3D - 242 442 IPR036987 -
Acco13g0064 671 MobiDBLite consensus disorder prediction 592 671 - -
Acco13g0064 671 ProSitePatterns Zinc finger PHD-type signature. 9 60 IPR019786 -
Acco13g0064 671 MobiDBLite consensus disorder prediction 633 671 - -
Acco13g0064 671 MobiDBLite consensus disorder prediction 598 632 - -
Acco13g0064 671 ProSiteProfiles Zinc finger RING-type profile. 508 565 IPR001841 -
Acco13g0064 671 ProSitePatterns Zinc finger RING-type signature. 523 532 IPR017907 -
Acco13g0064 671 ProSiteProfiles Zinc finger RING-type profile. 143 182 IPR001841 -
Acco13g0064 671 Pfam Zinc finger, C3HC4 type (RING finger) 143 181 IPR018957 GO:0046872
Acco13g0064 671 SMART G9a_1 266 423 IPR003105 -
Acco13g0064 671 SUPERFAMILY PUA domain-like 246 431 IPR015947 -
Acco13g0064 671 SUPERFAMILY RING/U-box 135 189 - -
Acco13g0064 671 SMART ring_2 143 181 IPR001841 -
Acco13g0064 671 SMART ring_2 508 564 IPR001841 -
Acco13g0064 671 SMART ring_2 15 60 IPR001841 -
Acco13g0064 671 CDD RING-HC_ORTHRUS_rpt1 141 186 IPR047498 -
Acco13g0064 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 489 606 IPR013083 -
Acco13g0064 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 209 IPR013083 -
Acco13g0064 671 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 4 607 IPR045134 -
Acco13g0064 671 SUPERFAMILY FYVE/PHD zinc finger 7 65 IPR011011 -
Acco13g0064 671 ProSiteProfiles YDG domain profile. 271 419 IPR003105 -
Acco13g0064 671 Pfam SAD/SRA domain 271 422 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0064 Acco-ChrAcco13 522054 525913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0064 1 599 C2H2 Transcription Factor Family AT5G39550 59.106 0.0 704