Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0048 ATGGTCACACTAAGACGGCGGGGCGACTCTCAGGCGGAGAAGAAAGAAGGAACGGGGCTTGCCAATTATGAAATTACTACAACTCTGGGAACTGGCAGTTTCGGAAAGGTGAAATTGGCCAAACACATCCATTCTCATCAACTCTTTGCCTTCAAGATCATCGACAAGAACAAGATCGTCCAACTCGATATCGCTCATCAGATAAAGAGGGAGATAGCCACCCTCAAGCTTCTCAAGCATCCCAACATCGTCAGATTACACGAGGTGTTGGCCAGCAAAACGAAAATTTACATGGTGTTGGAGTACGCCAATGGAGGAGAGTTGTTTGACAGAATTGCATCCAAAGGTAGGCTTAAAGAAGCAGAAGGTCGGAAGCTTTTCCAACAATTAATTGACGGCGTGAGCTACTGTCACAATAAAGGTGTCTTCCACAGGGATCTTAAGCCGGAGAATGTACTAGTTGATGCCCAAGGCAACATAAAGATAACCGATTTTGGCCTCAGTGCTTTGCCCCAGCACATTAGGGCCGATGGGTTGCTGCATACAACCTGTGGAAGTCCCAGCTATGTTGCTCCAGAGGTCCTTGCTAATAGAGGCTATGACGGTGCAACATCAGATACATGGTCATGTGGTGTCATCTTGTTTGTAATTCTAACGGGATATCTCCCTTTTGAAGACCGGAACATCGTCGTTCTCTATCAGAAGATATCTAAAGGAGATGTCCGGATACCAAAACGGCTATCACCTGGAGCCCAAAACTTGCTAAGGAGGATTTTTGACCCCAATCCTCTTACCCGGATAACCCTGGCCGGTATCAAAGAAGATGAATGGTTCAGGCAGGACCATGTTCCATCAAATCCTGAGGACGGCGGAGAGGAAGAGAAACAGAATGTGCATATCGATGATGAAGCCTTTTCAATCCATGACGCGCCTCATGAAGCAGAACAGAAGAGTCTCGAGTCCTCAACCCTTATCAATGCATTTCAATTGATAGCAATGTCTTCATGGTTAGACCTCTCAGGCTTTTTTGAGAAAGAGGATGTTTCTGAAAGAAAGATGAGATTTACATCCAACCATTCAGCAAAAGATCTCATCGCGAAGATTGAAGATATTGGAACAGAAATGGGATTTAGAGTCCAGAAGAAAAATGGAAAATTGAAAGTGATACAAGAGAATGAGGCACACAGAAGTCTAGGTGGCCTCTCGGTGGCAGTAGAGGTTTTTGAAATAAATCCATCCTTGCATGTGGTGGAGTTGTGTAAGTCGTATGGAGACTCTTCTGTATATGGACAGTTATGCAAGAAGCTATCAGATGATTTGGCATTAGCCCCGGGCCCAGCGCGTGGAGAATCAGACGAGTGA 1362 0.4537 MVTLRRRGDSQAEKKEGTGLANYEITTTLGTGSFGKVKLAKHIHSHQLFAFKIIDKNKIVQLDIAHQIKREIATLKLLKHPNIVRLHEVLASKTKIYMVLEYANGGELFDRIASKGRLKEAEGRKLFQQLIDGVSYCHNKGVFHRDLKPENVLVDAQGNIKITDFGLSALPQHIRADGLLHTTCGSPSYVAPEVLANRGYDGATSDTWSCGVILFVILTGYLPFEDRNIVVLYQKISKGDVRIPKRLSPGAQNLLRRIFDPNPLTRITLAGIKEDEWFRQDHVPSNPEDGGEEEKQNVHIDDEAFSIHDAPHEAEQKSLESSTLINAFQLIAMSSWLDLSGFFEKEDVSERKMRFTSNHSAKDLIAKIEDIGTEMGFRVQKKNGKLKVIQENEAHRSLGGLSVAVEVFEINPSLHVVELCKSYGDSSVYGQLCKKLSDDLALAPGPARGESDE 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0048 453 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Acco13g0048 453 SMART serkin_6 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0048 453 FunFam Non-specific serine/threonine protein kinase 322 443 - -
Acco13g0048 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Acco13g0048 453 Pfam NAF domain 323 381 IPR004041 GO:0007165
Acco13g0048 453 FunFam Non-specific serine/threonine protein kinase 16 322 - -
Acco13g0048 453 ProSiteProfiles Protein kinase domain profile. 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0048 453 SUPERFAMILY Protein kinase-like (PK-like) 22 288 IPR011009 -
Acco13g0048 453 Gene3D Transferase(Phosphotransferase) domain 1 110 324 - -
Acco13g0048 453 FunFam Aurora kinase A 15 106 - -
Acco13g0048 453 CDD CIPK_C 326 440 - -
Acco13g0048 453 Gene3D Kinase associated domain 1, KA1 325 442 - -
Acco13g0048 453 Pfam Protein kinase domain 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0048 453 ProSiteProfiles NAF domain profile. 320 344 IPR018451 GO:0007165
Acco13g0048 453 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 21 425 - -
Acco13g0048 453 Gene3D Phosphorylase Kinase; domain 1 18 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0048 Acco-ChrAcco13 378101 381702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0048 86 441 CBL-interacting serine-threonine protein kinases AT3G17510 66.573 6.53e-168 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Acco13g0048 Pkinase 1.4e-70 CL0016