Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g2142 ATGATGAAGTCGATGGAGTCAAGTGTCCCACCTGGGTTTCGTTTTCACCCAACCGATGAAGAGCTAGTTGGCTATTATCTGAAGAAGAAAGTTGCTTCTCAGAAGATTGACCTTGACGTTATCAGAGAGATCGATCTATATCGTATAGAACCGTGGGATCTTCAAGAGAGATGCAGGATCGGATACGAGGAGCAGAACGAGTGGTATTTCTTCAGCCACAAGGACAAGAAGTATCCGACAGGGACGAGGACAAACAGAGCTACCATGGCGGGGTTCTGGAAGGCGACAGGAAGAGACAAGGCGGTGTACGACAAGACAAAGCTTATGGGTATGAGGAAGACCCTCGTTTTCTATAAAGGAAGAGCTCCGAATGGCCAGAAAACTGACTGGATCATGCACGAATACAGACTCGAATCTGATGAGAACGGACCTCAACAGGAGGAAGGATGGGTTGTATGTAGAGCTTTCAAGAAAAAGACGAACGGCCAAACGAAGGCCGTGGATGGATGGGATTCAAGCTACTTTCTGGAGGAAGCAAGTGGAGTGGATCCTATTGAGTTAATCGCAAGGCAGCCTCATCATCATCATCATCATCATCAGAGTTATAACGTAACACAAAACAATTACACGTGCAAGCAAGAGATAGAAGTGGACACCTTGATTCACTCATCAGACCCATTATTCATACAGCAGCTTCCTCAGCTAGAAAGGCCCTCTCTGGTATTGACAAAGTGGTCTAGCTCATCAGACAACAAAAACAGCAACGAGGAAGATGACCCAACCACAAAGAAAGTGACTACTGATTGGAGGGCTCTCGACAAGTTTGTGGCTTCCCAATTGAGCCAGGAAGACAGCTTTGAAACACCTAAATATAACAGCTCCGACACCTCATCCATGCTCTTGTTGCAGAATACTGCTACCAGAGATGAAGCAGACGAAGGAAACCGGTTAAGCTTAAGCCCTTTTTTTAATACTAGAACCTCATCAGACTGTGATATTGGGATATGCGTCTTTGAAAAATGA 1023 0.4545 MMKSMESSVPPGFRFHPTDEELVGYYLKKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLMGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGPQQEEGWVVCRAFKKKTNGQTKAVDGWDSSYFLEEASGVDPIELIARQPHHHHHHHQSYNVTQNNYTCKQEIEVDTLIHSSDPLFIQQLPQLERPSLVLTKWSSSSDNKNSNEEDDPTTKKVTTDWRALDKFVASQLSQEDSFETPKYNSSDTSSMLLLQNTATRDEADEGNRLSLSPFFNTRTSSDCDIGICVFEK 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g2142 340 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Acco12g2142 340 FunFam NAC domain-containing protein 18 162 - -
Acco12g2142 340 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Acco12g2142 340 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 254 - -
Acco12g2142 340 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Acco12g2142 340 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Acco12g2142 340 MobiDBLite consensus disorder prediction 245 265 - -
Acco12g2142 340 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g2142 Acco-ChrAcco12 32958076 32960814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g2142 2 339 NAC Transcription Factor Family AT2G18060 59.682 8.28e-140 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco12g2142 NAM 7.2e-38 No_clan