Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g2128 ATGGGTCGGGGAAAGATTGAGATCAAGTTGATCGAGAATGCCACCAACAGGCAGGTCACCTACTCCAAACGGCGCAATGGCGTTTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTTTCCCTTATCATGTTCTCCAAAAACAATAAGATGCATGAATACACCACTCCTGGCTTTACGACAAAGCATATAATAGATCAGTACGAGAGGAGTTTGGGGAATATCGATCTCTGGAGTGCCCAATACGAGAGGATGCTCGAAACCATGAGGAAGCTGAAGGATATTAATAATAAACTCAGAAGACAGATAAGGCAGAGGATAGGTGAGGATTTAAATGATCTGAACTTCCAGCAACTACGCACTCTTGAGGAGGATATGGTTTCTGCCTCAGCGATCATACGCGAACGAAAGCTTCATGTGATCAAAACTCGGACTAGTACCAGTAAGAAAAAGGTGAAAAGCATGGAGCTGATGAACGAGAATCTGCTGCTTGAACTTGAAAAGTGTGTGATCCATTCACAATATCTGGTGCACGAGGAAGGAGATCAGGAATCAGCAGTTACAGTGGCCACAGGTGTCTCCAACTTCCATGGACTGTGCCACCCGCAGCACCCTACCCACATGAATCTACATCATAATGGAATGGGATTGAGATCAGACGATCTGCGCCTTGCTTGA 687 0.4527 MGRGKIEIKLIENATNRQVTYSKRRNGVFKKAHELSVLCDAKVSLIMFSKNNKMHEYTTPGFTTKHIIDQYERSLGNIDLWSAQYERMLETMRKLKDINNKLRRQIRQRIGEDLNDLNFQQLRTLEEDMVSASAIIRERKLHVIKTRTSTSKKKVKSMELMNENLLLELEKCVIHSQYLVHEEGDQESAVTVATGVSNFHGLCHPQHPTHMNLHHNGMGLRSDDLRLA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g2128 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco12g2128 228 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco12g2128 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco12g2128 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Acco12g2128 228 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Acco12g2128 228 Coils Coil 85 108 - -
Acco12g2128 228 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Acco12g2128 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco12g2128 228 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Acco12g2128 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Acco12g2128 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco12g2128 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco12g2128 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco12g2128 228 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g2128 Acco-ChrAcco12 32804327 32805747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g2128 1 210 MADS-box Gene Family AT3G54340 50.463 1.76e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco12g2128 K-box 9.2e-16 No_clan