Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g2098 ATGAGAGATGGAATGAGCAATGTGTCAAAGCGAGGTGTAGAATGTAAGCAACGGCATAGTCGAAAAGCAAAATCACATATTGCTCCAGATGTCACCCTACCTCCAGTTGATCCTATCCAACAAGGACAGTGGGCAAATCTGCCTCCAGAACTGCTTTTGGACATTATTCGGAGGGTGGAAAAGAGCGAGACAACATGGCCTGCACGGGCTGTCGTTGTTTTCTGTGCTTCAGTATGTAAATCGTGGAGAGCCATTACAAAGGAAATCGTTAAGACTCCTGAGCAATGTGGGAGGGTCACATTTCCTGTCTCCGTGAAGCAGCCCGGTCCTCGTGATTCACCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTTTACATATAACTTGTATTTTGGTCTTGTGCCATCGGAAAATGAGGGAGCCAAGTTGTTATTAGCTGCAAAAAGGATAAGAAAACCAACAGCCACCGAGTTTATTATATCCTTTATTGCTGATGATTTTTCTCGGGCCAGCAGCACATATCTTGGTAAATTGAGGTCCAATTTTTTGGGAACCAAGTTTGCCATATATGATAGCCAGCCTCCACTGAAAGCTAGCTTTCTAGCGAATAATCATTCTAGTAATAAGTTCCACTCAAAGCAGGTATCTCCCAAAGTACCGGCTCGCAAACATAATGTGGCCACCATCAGTTATGAACTCAATGTTCTTCGCACAAGAGGTCCAAGAAGAATGCACTGCATTTTGAACTCCATACCTTTGTCGGCTATTCAGGAAGAAGGCAATGCCCCAACGCCAACAACTCTTCCACAATTTTCTTCCTCACCAGCATCGAAAGGGAAAGATTCAACAACAGATTTAAACTCAACAAACTTACTAGATCCACTGGCATCGAGTCAGGGCATGGTCGAGCCTCTTGTTCTTAAAAACAAGGCTCCCAGATGGCACGAGCAACTTCAGTGCTGGTGCCTAAATTTCAAGGGCCGTGTCACGGTGGCTTCTGTGAAGAATTTCCAGCTTTGTGCTGCTGTTGATCCGTCTCATGACGTTCCTGCTGCAGAACAAGAGAAGGTGATCTTGCAATTTGGGAAGATTGGTAAAGACATATTCACTATGGACTACCGGTATCCTCTCTCAGCTTTTCAGGCCTTTGCCATATGCTTGAGCAGTTTCGATACTAAACCGGTGTGTGAATGA 1197 0.447 MRDGMSNVSKRGVECKQRHSRKAKSHIAPDVTLPPVDPIQQGQWANLPPELLLDIIRRVEKSETTWPARAVVVFCASVCKSWRAITKEIVKTPEQCGRVTFPVSVKQPGPRDSPIQCFIRRNRETFTYNLYFGLVPSENEGAKLLLAAKRIRKPTATEFIISFIADDFSRASSTYLGKLRSNFLGTKFAIYDSQPPLKASFLANNHSSNKFHSKQVSPKVPARKHNVATISYELNVLRTRGPRRMHCILNSIPLSAIQEEGNAPTPTTLPQFSSSPASKGKDSTTDLNSTNLLDPLASSQGMVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLCAAVDPSHDVPAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPVCE 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g2098 398 CDD F-box_AtTLP-like 44 88 - -
Acco12g2098 398 SUPERFAMILY F-box domain 38 88 IPR036047 GO:0005515
Acco12g2098 398 Gene3D Tubby Protein; Chain A 101 398 IPR025659 -
Acco12g2098 398 Pfam F-box domain 44 91 IPR001810 GO:0005515
Acco12g2098 398 SUPERFAMILY Tubby C-terminal domain-like 93 398 IPR025659 -
Acco12g2098 398 PRINTS Tubby superfamily signature 308 325 IPR000007 -
Acco12g2098 398 PRINTS Tubby superfamily signature 175 199 IPR000007 -
Acco12g2098 398 PRINTS Tubby superfamily signature 376 398 IPR000007 -
Acco12g2098 398 PRINTS Tubby superfamily signature 224 251 IPR000007 -
Acco12g2098 398 PRINTS Tubby superfamily signature 159 175 IPR000007 -
Acco12g2098 398 PRINTS Tubby superfamily signature 326 342 IPR000007 -
Acco12g2098 398 PRINTS Tubby superfamily signature 355 374 IPR000007 -
Acco12g2098 398 MobiDBLite consensus disorder prediction 1 32 - -
Acco12g2098 398 ProSitePatterns Tub family signature 1. 326 339 IPR018066 -
Acco12g2098 398 MobiDBLite consensus disorder prediction 259 291 - -
Acco12g2098 398 Pfam Tub family 105 393 IPR000007 -
Acco12g2098 398 Gene3D - 38 91 - -
Acco12g2098 398 PANTHER TUBBY-RELATED 20 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g2098 Acco-ChrAcco12 32518036 32519891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g2098 1 398 TUB Transcription Factor Family AT2G18280 64.428 0.0 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Acco12g2098 Tub 2.6e-105 CL0395