Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g2094 ATGGGAACTGACCGTGGTGAAGTAGTGGAGCCAGTACCAAATATCCGCTCCTTTAAGGTCCATCGTAAAATGTGCACAGAACTAATGAAATTAGTTGATAGAATCTCTAGGATATTCCCAGATATTGAGGCAGCACGTCCTCGATGCTCATCAGGAATACAATCTCTGTGCTTGCTAAACAATGCAGTTGATAAAGCCAAACTTCTTCTGCAGCATTGCTGTGAGTCTAGCAAACTCTACCTGGCTTTGACGGGAGATTCGGTACTCTCAAGATTCCAAAAAGCAAGAAAATCATTGGAGCAAAGCTTAAGTCAAGTTCAGAGCGTAGTTCCAGTTATGCTGGCTGCAGAGATTTCTCAAATAATTGATAATCTTGCACGCATGACTATTGTATTGGATTCAGCTGAAGAAGAGACTGGAAGGGTTGTAAAGGAATTACTTCAGGAAGGTGCTTCAACCTCAGACTCTAATGAAAATTCTGAAATTAAAGCTCTTCAGTTTGCTGCAGCGAGACTTAACATCACATCCCCAAAGGCCATCTTAATAGAGAAACGATCTATTAAGAAGTTGCTCGATAAAGTTGGACCTAATGATCACACAAAAAAGACGATCTTGAGATATCTCTTGCATCTATTGAAGCAGTATGGTAACTATATAACAGGAGAACAGATGGAAGCAGTCTATCCGTATGGTGATGGACCAATTGTACCTGAGAACCGCAGTCTTCACTCTCAACATATCCATGATGTTGAACCAGAAAGATGCTTTAATTATGATCAATTTGAAACTCACAATAGTGAGATGGGTAGAGCAGAACCGCCAGAGGAATACAAATGTCCAATATCTTCAGGATTAATGTATGATCCTGTTGTTATTGCTTCTGGAGCAACATATGAAAGAATGTGGATTCAAAAGTGGTTTGACGAGGGTAATGATACATGTCCTAAAACTGGGAAGAAACTGGCCCATATGTCATTGACTCCAAACACTGTTATGAAGGACTTAATATCCAAGTTGTGCAGAAATAATGGAGTGACACTTGCTGAACCACAAAAGCTAGCAAAAGAATATCACTCATGGGAGGTTTCTTCAACTTCCATTAGGAGCTTTGGTAGTTCTATGAATGATCTGCACTTGCCAGTAGATCTTAGCGGCATGTCACTTGGATCATTAGATTATAGTCAAGGCTCTGATTCTTCACATGCTAGGAACAGTAATGACTTAAATTTGATGCCAAAGAAGGCCAATGACAATTCTTGGAGTCATCAACTTGACATGCATGTGCATGAGACTGATCTGATAACTTTGTCTAGATTCCCCAACCTTGAATGGGATTCTCAATGCCAAGCCATTAAAGATCTGAAAGATCGTTTGAAATGCAATTGCCAAGCTTCTTGTTCTCTGCCTTCTGAAAAGTTTGTTGAACTCCTCAACGGATTTTTGAGCAGTGCATATGAACATCAAGATGTCAAAGCTCTGAGAACAGGAACTGAATTGTTAATGGAATTTGTGAATAACTGCGGAAAGGATCTGTCCTATTTAAGAGAAGACACATTTGGCATGTTGGGAAGTTTCCTTCATTTGGAAGTGGTGGGTGAAGCTCTTTCTATAATGGAGAAACTATCTGCAAATTATCACAACAAAGCTACAATTGCAACATCCAGTGTGCTGACTTCCATCTTAAAGATTCTGGACTCTGACAGCAGAGAGTTCCAAGAACAAGCTATCAGAATATTGTATAATCTGTCTTTCAACAGTGAGAATTGCTCCCACATGGCATCTCTTGGGTGCATCCCAAAATTGCTGCCCTATTTTGAGGACCAGACTCTTTTAAGGTACTGCACATGTATGTTGAAAAACCTTGGTGATACTGAGGTCGGCAGGGTTTCTATTGTGGGGACTAATGGATGCATAGCTTCAGTTGCTGGGATACTTGAAACTGGCAGTGTCGAGGAAAAGGAGCATGCACTTTCTGTTTTACTCTCTTTATGCTCTCAGCGTGAGGATTATTGTCAGTTGGTCATGTATGAGGGTGTTATCCCTTCTCTCGTCACTATCTCCATCAATGGAAGTGACAATGGAAAGGTGAGTGCATTGGAATTGCTTCGTCTTTTGGGGGATGTTCAATATGAAGAAGAGTCCATGAAGCCAAGATGTGATACTCAAGATTCTAATGATCATTCCCAAGAAAAGAAATCGTCGAAGACCTCTGGTTTTCTGAAGAAACTATCACCATTCTCAAAAATCAAGAGGTGA 2256 0.4047 MGTDRGEVVEPVPNIRSFKVHRKMCTELMKLVDRISRIFPDIEAARPRCSSGIQSLCLLNNAVDKAKLLLQHCCESSKLYLALTGDSVLSRFQKARKSLEQSLSQVQSVVPVMLAAEISQIIDNLARMTIVLDSAEEETGRVVKELLQEGASTSDSNENSEIKALQFAAARLNITSPKAILIEKRSIKKLLDKVGPNDHTKKTILRYLLHLLKQYGNYITGEQMEAVYPYGDGPIVPENRSLHSQHIHDVEPERCFNYDQFETHNSEMGRAEPPEEYKCPISSGLMYDPVVIASGATYERMWIQKWFDEGNDTCPKTGKKLAHMSLTPNTVMKDLISKLCRNNGVTLAEPQKLAKEYHSWEVSSTSIRSFGSSMNDLHLPVDLSGMSLGSLDYSQGSDSSHARNSNDLNLMPKKANDNSWSHQLDMHVHETDLITLSRFPNLEWDSQCQAIKDLKDRLKCNCQASCSLPSEKFVELLNGFLSSAYEHQDVKALRTGTELLMEFVNNCGKDLSYLREDTFGMLGSFLHLEVVGEALSIMEKLSANYHNKATIATSSVLTSILKILDSDSREFQEQAIRILYNLSFNSENCSHMASLGCIPKLLPYFEDQTLLRYCTCMLKNLGDTEVGRVSIVGTNGCIASVAGILETGSVEEKEHALSVLLSLCSQREDYCQLVMYEGVIPSLVTISINGSDNGKVSALELLRLLGDVQYEEESMKPRCDTQDSNDHSQEKKSSKTSGFLKKLSPFSKIKR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g2094 751 SMART arm_5 585 623 IPR000225 GO:0005515
Acco12g2094 751 SMART arm_5 667 707 IPR000225 GO:0005515
Acco12g2094 751 SMART arm_5 544 584 IPR000225 GO:0005515
Acco12g2094 751 SUPERFAMILY RING/U-box 263 347 - -
Acco12g2094 751 PANTHER U BOX DOMAIN-CONTAINING 23 717 - -
Acco12g2094 751 MobiDBLite consensus disorder prediction 713 751 - -
Acco12g2094 751 MobiDBLite consensus disorder prediction 394 414 - -
Acco12g2094 751 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Acco12g2094 751 SUPERFAMILY ARM repeat 486 705 IPR016024 -
Acco12g2094 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 355 IPR013083 -
Acco12g2094 751 Pfam Kinesin-associated protein (KAP) 535 649 - -
Acco12g2094 751 Pfam U-box domain 274 339 IPR003613 GO:0004842|GO:0016567
Acco12g2094 751 CDD RING-Ubox_PUB 274 326 IPR045210 -
Acco12g2094 751 Coils Coil 118 138 - -
Acco12g2094 751 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Acco12g2094 751 MobiDBLite consensus disorder prediction 713 737 - -
Acco12g2094 751 Gene3D - 470 732 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g2094 Acco-ChrAcco12 32509360 32512518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g2094 5 713 U-box Gene Family AT4G36550 39.331 1.58e-144 439