Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g2090 ATGGAAGAACACAGTCATCACCAAGATAGGCAAAAAGAGATGACAACAACCACTCAGAATTATGATGAAGATGATGATGATCACCCCAAAAGAGATTCTTCTTATTCAGAACAACACCATCGCCTTTATCTTCCTCCTCCGTCGAATCAACTACAAAGTGATCCATATGCAAGCTTAACGATCGTGAAGTACAGAGAATGTATGAAAAATCACGCAGCGAGCATGGGGAGTCATGTTGTGGATGGATGTGGAGAGTTCATGCCAAACGGAGAAGAAGACACCCCGGAATCTTTCAGATGTGCTGCTTGTGGATGCCACCGGAATTTTCATCGGAAAGAAACACAAGGTGAGCCAGAACAACATATTATTTCTGATTATTATTACACCTATTATTATTCCAACAAAAGCAATGATCCACAACCACAAAGAATTGCTCCTCCTCCTTTAGTCGTCCCTTCTTCTCTTCAACATCAACATAATAGATTGATTAATCCGCCAATGATGGTGGCCTTTGGAGGAGGAGTGCCGGTGGATTCCTCCGGCGAAGGCCGGCAACAGCCGGCATCAATGTCGAAGACGAGGAAGAGGTTTAGGACAAAGTTTACACAAGAACAGAAGAGGAGGATGATGGAATATGCAGAGAAGATTGGGTGGAAGATCCAGAAGAATGAGGAACAAGTACGGCAATTCTGTTCTCAGGTGGGAGTGAAGATGCAGGTTTTCAAGATTTGGATGCACAACAACAAGCAAAGGACCAAGCTGCACCAAGTGTAA 774 0.438 MEEHSHHQDRQKEMTTTTQNYDEDDDDHPKRDSSYSEQHHRLYLPPPSNQLQSDPYASLTIVKYRECMKNHAASMGSHVVDGCGEFMPNGEEDTPESFRCAACGCHRNFHRKETQGEPEQHIISDYYYTYYYSNKSNDPQPQRIAPPPLVVPSSLQHQHNRLINPPMMVAFGGGVPVDSSGEGRQQPASMSKTRKRFRTKFTQEQKRRMMEYAEKIGWKIQKNEEQVRQFCSQVGVKMQVFKIWMHNNKQRTKLHQV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g2090 257 MobiDBLite consensus disorder prediction 1 53 - -
Acco12g2090 257 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 113 IPR006456 -
Acco12g2090 257 MobiDBLite consensus disorder prediction 1 38 - -
Acco12g2090 257 NCBIfam homeobox domain, ZF-HD class 194 250 IPR006455 -
Acco12g2090 257 ProSiteProfiles 'Homeobox' domain profile. 192 255 IPR001356 GO:0003677
Acco12g2090 257 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 21 250 - -
Acco12g2090 257 FunFam Zinc-finger homeodomain protein 2 181 254 - -
Acco12g2090 257 Pfam ZF-HD protein dimerisation region 62 114 IPR006456 -
Acco12g2090 257 SUPERFAMILY Homeodomain-like 180 253 IPR009057 -
Acco12g2090 257 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 113 IPR006456 -
Acco12g2090 257 Gene3D - 178 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g2090 Acco-ChrAcco12 32484515 32485288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g2090 60 250 ZF-HD Transcription Factor Family AT2G02540 41.089 2.98e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Acco12g2090 ZF-HD_dimer 8.6e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2293 11 36485646 36486578 Acco12g2090 12 32484515 32485288 CCT
Acco12g2090 12 32484515 32485288 Acco12g2090 12 32484515 32485288 ECH
Acco12g2090 12 32484515 32485288 Acco11g2293 11 36485646 36486578 ECH