Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g2088 ATGTCTGGTTGCGGCAGCTACGAGGGGCACGTGATGGGAGAGTGCGCATGTGGCATGTATCACAGCCAAACCAATTCCTTCCCTATGCACTACACTACTAACCAAAATTCCTATGCTTATGACTACGACGATTCCGACGTGTATTCTTCCTTCACGCCCTCCTCGTCCTCCGTCGACTGCACGCTCTCTCTCGGCACCCCCTCCACGCGTTTAACTCATCAAGACGAAGACAGGCGAGGCGGCGGCCATCGCAGCAGCGAACGACGTCGCTCTGTCTCCAACATGTGCTGGGATTTGTTACAGTCCAATCAATCCCACAGTAGCAATAATAAGTCCGGCAAAGGCGGCTCCTCCTCCTCCTCCAATGATCCTCTTCCCGCTCGTCGCTGTGCCAATTGCGACACCACTTCCACGCCTCTTTGGAGAAATGGCCCCAGAGGTCCCAAGTCACTCTGCAATGCCTGTGGGATCAGATACAAGAAGGAAGAGAGAAGAGCCGCCGCCGCGGCTTCTGCGTCGTCCGGCGGAGTCATGGATTCTCAGGCGATGTATGGCCAACAAGACAACTACTGGTACGCGCAGTCGTCGTACTCACAGGGCCAGATAATGCCGTGTTACTCACCGGGAATGGTGGAAGACGGTAACGGAGACTCCGACAACGGCATGGCGGCTTTCCTCTCATGGAGGCTCAATGTAACGGACAGACCAAGCCTCGTCCATGACTTTACAAGATGA 735 0.5524 MSGCGSYEGHVMGECACGMYHSQTNSFPMHYTTNQNSYAYDYDDSDVYSSFTPSSSSVDCTLSLGTPSTRLTHQDEDRRGGGHRSSERRRSVSNMCWDLLQSNQSHSSNNKSGKGGSSSSSNDPLPARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRAAAAASASSGGVMDSQAMYGQQDNYWYAQSSYSQGQIMPCYSPGMVEDGNGDSDNGMAAFLSWRLNVTDRPSLVHDFTR 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g2088 244 Gene3D - 126 183 IPR013088 GO:0006355|GO:0008270
Acco12g2088 244 PANTHER GATA TRANSCRIPTION FACTOR 18 12 244 IPR044272 GO:0003700|GO:0009908
Acco12g2088 244 MobiDBLite consensus disorder prediction 71 90 - -
Acco12g2088 244 SMART GATA_3 124 176 IPR000679 GO:0006355|GO:0043565
Acco12g2088 244 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 127 164 - -
Acco12g2088 244 Pfam GATA zinc finger 130 164 IPR000679 GO:0006355|GO:0043565
Acco12g2088 244 MobiDBLite consensus disorder prediction 103 126 - -
Acco12g2088 244 CDD ZnF_GATA 129 161 IPR000679 GO:0006355|GO:0043565
Acco12g2088 244 ProSiteProfiles GATA-type zinc finger domain profile. 124 160 IPR000679 GO:0006355|GO:0043565
Acco12g2088 244 MobiDBLite consensus disorder prediction 63 90 - -
Acco12g2088 244 ProSitePatterns GATA-type zinc finger domain. 130 155 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g2088 Acco-ChrAcco12 32464584 32465438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g2088 4 244 C2C2-Gata Transcription Factor Family AT3G50870 40.210 4.13e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco12g2088 GATA 6.8e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2288 11 36438583 36439418 Acco12g2088 12 32464584 32465438 CCT
Acco12g2088 12 32464584 32465438 Acco12g2088 12 32464584 32465438 ECH