Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g2061 ATGAATCAACATCCTATTCCTATTGAAGCTCATATGGCCCTCTTCTCTCACTTATGCCCAACTCCTTCGTACTCTGAAATCATCCCTCAACAACAAGGGGAAGCGAAGCGAAGACGACGTCGTAAGAAGGAGAAGAACCAAGGCGAAGGAGCCAATAAGAAGAGGAAGTTGAGTGAGCAGCAAGTGACTCTTCTAGAACTCAACTTCGGCAACGAACATAAATTAGAGTCGGAGAGAAAGGACAGGCTGGCATCGGAGCTTGGTCTTGATCCTCGTCAGGTGGCCGTGTGGTTTCAAAACCGAAGGGCTCGATGGAAGAATCAGAAGTTGGAAGAAGCCTACTCCAACCTCAAGAAACTCCATCAAACCACCCTCCTCGAGAAAAGCCACCTTGCAGCTCAGGTGTCGATGCTACAGGAGCAGCTTTCGAAAGCAAAGGAGGAGATCCAACGGCTACTAGAGAGGGGTGAGAGATCGGTGACAAACGACACCACGAATACGAATAGCCCGAGTTCATCACAGACAATGGAAGCTGTGGGGGATCCATTGATTTTGGGGGAATTCGGAGTCCAAGGTTACGATGAGGCCGATGATGTCTTATTGTACCCAACAGATCATTACATGAATAACTTGGAATGGCTCATTTCTTACCTGTGA 657 0.481 MNQHPIPIEAHMALFSHLCPTPSYSEIIPQQQGEAKRRRRRKKEKNQGEGANKKRKLSEQQVTLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNQKLEEAYSNLKKLHQTTLLEKSHLAAQVSMLQEQLSKAKEEIQRLLERGERSVTNDTTNTNSPSSSQTMEAVGDPLILGEFGVQGYDEADDVLLYPTDHYMNNLEWLISYL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g2061 218 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Acco12g2061 218 MobiDBLite consensus disorder prediction 159 176 - -
Acco12g2061 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 32 172 IPR045224 GO:0003700
Acco12g2061 218 MobiDBLite consensus disorder prediction 27 57 - -
Acco12g2061 218 MobiDBLite consensus disorder prediction 154 176 - -
Acco12g2061 218 Coils Coil 100 120 - -
Acco12g2061 218 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Acco12g2061 218 Gene3D - 45 115 - -
Acco12g2061 218 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Acco12g2061 218 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Acco12g2061 218 SUPERFAMILY Homeodomain-like 52 115 IPR009057 -
Acco12g2061 218 SMART HOX_1 51 112 IPR001356 GO:0003677
Acco12g2061 218 Pfam Homeodomain 53 107 IPR001356 GO:0003677
Acco12g2061 218 CDD homeodomain 53 109 IPR001356 GO:0003677
Acco12g2061 218 Coils Coil 128 159 - -
Acco12g2061 218 FunFam homeobox-leucine zipper protein ATHB-40 47 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g2061 Acco-ChrAcco12 32240252 32241817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g2061 11 218 Homeobox Transcription Factor Family AT2G18550 49.091 3.79e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Acco12g2061 Homeodomain 3.5e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2240 11 36088256 36090052 Acco12g2061 12 32240252 32241817 CCT
Acco12g2061 12 32240252 32241817 Acco12g2061 12 32240252 32241817 ECH