Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g2045 ATGGCTTCTCTGGGCATCCATGCGACTGTTTGGCGCTTTGTTTTGACAGTAATAATGATTGTGACCATTTTGGGTGCCAAGCTTAGTGATGCGAAGCAAGAAAAGATGAGTGGTTTAAGAATGAACATGATTGATCAGTGCTGGAGATTAAACCCAGAATGGAGAAGACACAGAATACAACTTGCCACATGCTCTGTGGGCTACGCAGGCAAGATGACAAACAACATTGGCAAGGATGTTGTCCACTATAAAGTCACGGATCCAAGTGACGACCCCATTAACCCGAAACCCGGAACTTTGAGATACGGAGCCTCCGTGATCCAAGGCAAAGTCTGGATCACCTTCCAAAGAGACATGCGCATCAGGCTCGCTAGACCCCTCCTCATCAGCAGCTTCACCACCATTGATGCCCGAGGCGTTGATGTCCACATTGCTCATAACGCTTGCTTGATGATCTACAAGGAAACTAACATAATCATCCATGGACTTCGGATCCATCACTGCAAGCCTCAAGGTCCGGGAATGGTGATGGGAGGCGCGGGGAAGGTGATACCTCTGGGTCAAGTAGACGGAGACGCAATCAGATTGGTTTCGGCTTCGAAGATTTGGATCGATCACAACACTCTCTACAGATGCGCAGATGGCCTTCTGGACGTCACAAGGGGTTCCACAGACGTGACTGTGTCAAATAACTGGTTCAGAGATCAAGACAAGGTTATGCTTCTAGGGCACGATGATGGGTACGTGAGAGACCAGGACATGAAGGTCACTGTAGTCTACAACCATTTTGGACCTAATTGCAACCAACGCATGCCCAGGATACGTCATGGATATGCTCATGTAGCTAACAATCTGTACCAAGGATGGATGCAATACGCCATTGGAGGCAGCATGGAGCCCAGCCTCAAAAGTGAAGCCAACCTCTTCATAGCTCCAACGTCTGGGAATAAAGAGGTGACGTGGAGAAAAGCTAGTAATGGAAATGAGGAAGCATTCGAATTTCATTCAGTGAGGGATGTGTTTGAGAATGGAGCTTCCTTCACTGTAACAAAAGGAGGAAGAGTGCCAAAGGCTAATTATAACGCAGAACAAGGATTCAAAGTTGCAGATGCTTCCTGTGTTAGGCCACTCACTATATCAGCAGGCGCATTACGTTGCAGTAAAACCTCAAGGTGCTGA 1179 0.4758 MASLGIHATVWRFVLTVIMIVTILGAKLSDAKQEKMSGLRMNMIDQCWRLNPEWRRHRIQLATCSVGYAGKMTNNIGKDVVHYKVTDPSDDPINPKPGTLRYGASVIQGKVWITFQRDMRIRLARPLLISSFTTIDARGVDVHIAHNACLMIYKETNIIIHGLRIHHCKPQGPGMVMGGAGKVIPLGQVDGDAIRLVSASKIWIDHNTLYRCADGLLDVTRGSTDVTVSNNWFRDQDKVMLLGHDDGYVRDQDMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWMQYAIGGSMEPSLKSEANLFIAPTSGNKEVTWRKASNGNEEAFEFHSVRDVFENGASFTVTKGGRVPKANYNAEQGFKVADASCVRPLTISAGALRCSKTSRC 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g2045 392 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Acco12g2045 392 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Acco12g2045 392 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Acco12g2045 392 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Acco12g2045 392 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Acco12g2045 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Acco12g2045 392 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Acco12g2045 392 SUPERFAMILY Pectin lyase-like 40 379 IPR011050 -
Acco12g2045 392 PANTHER PECTATE LYASE 18-RELATED 36 389 IPR045032 GO:0030570
Acco12g2045 392 SMART amb_all 118 315 IPR002022 -
Acco12g2045 392 Gene3D - 41 385 IPR012334 -
Acco12g2045 392 Pfam Pectate lyase 139 309 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g2045 Acco-ChrAcco12 32021456 32022954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g2045 72 319 Polysaccharide Lyase AT5G09280 73.387 5.72e-143 406