Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g2041 ATGGGTTGGTTTACGAAGCTGATTAAGGGCTCCAACCATAAAATTTCAAGGGGACAGTATCAGGGGAAATATGGAAATGACGACATTTGGGATGACCATCGTAATTCAGTGGATGGTTTGACTGATTTTGAGAAAGAAGAAATTGACCGTGCAATTGCACTCTCTCTATCAGAGGAGGATCACAAAGGGAAAAAAGTTATCGAGTATGACTCACAGTCAGAAGATGAAGAACTTTGTCCTATCGACGAGGAGGAAGATGAACATCTCGGTAAAGTTCAAGAAGAGGAAGCTGATTTTCTTGCTGATATTCAAAAGGAGGAAGATGAACATCATGCAAAACTTCAACTCGAGGAAGATGAACTACTTGCGAGAGCAATTGAAGAAAGTTTAAGCATGGCTTCCTCTCCTCGACGTGATGCGGGTTCTATATTTTCTCTATTTTCCACTGGATACAGGATCTGTGCTGGCTGCAATGCTGAGATTGGCCGTGGAAGGTTTTTAAGCTGTATGGGAGGAGTCTGGCATCCAGAATGTTTTCGTTGTCAAGCTTGCAATCTTCCAATCACTGATTATGAGTTTTCCATGTCTAACAATCGCCCTTACCACAAATCCTGCTACAAGGAGCAGCATCACCCAAAATGTGATGTTTGCAAGAATTTTATTCCAACGAATTCAGCTGGCCTCATTGAATATAGGGCACATCCTTTCTGGCATCAAAAATACTGTCCATCACATGAGCGTGATGGCACTCCTCGCTGTTGTAGCTGTGAAAGAATGGAGTCAAAAGACGCGAAATATCTTTTGCTGGATGATGGCCGGAAGCTATGTCTAGAGTGTCTAGACTCTGCAATAATGGATACTCATGAATGCCAGCCACTTTACCTTGAAATACAAGAGTTTTATGAAGGTTTAAACATGAAAGTGGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGGCTTTGCTTGTCAGAAGAGCAGACTGTCACCACTATTTTAAGGAGACCAAGGATCGGAGCAGGTTACCGAATCATGGACATGATAACTGAACCTTATAGGCTGATCCGTCGCTGTGAAGTTACTGCCATTCTTGTTTTATATGGCCTTCCAAGGTTGCTAACAGGATCAATCCTGGCTCACGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTACCCCAATCTGAGCCCCGAAGTTGAAGAAGGGATTTGCCAAGTTTTGGCTCATATGTGGTTAGATTCAGAAATATATGCTGGGTCTGGGGGCGATGGTGCATCCTCCTCCTCCTCGTCATCATCATCCTCACCTTCCTCCTCTTCCTCCACTTCATCAAAGAAGGGGAAAAGGTCCGACTTTGAGAAGAAACTGGGTGAATTTTTTAAACACCAGATTGAGTCTGATACCTCGTCAGCTTATGGAGATGGATTCAGATTGGGTAACAAGGCGGTGCTCAAGTATGGGCTCAGAAGGACCCTTGACCATATCCACCTGACAGGAAGTTTTCCCTTGTGA 1575 0.44 MGWFTKLIKGSNHKISRGQYQGKYGNDDIWDDHRNSVDGLTDFEKEEIDRAIALSLSEEDHKGKKVIEYDSQSEDEELCPIDEEEDEHLGKVQEEEADFLADIQKEEDEHHAKLQLEEDELLARAIEESLSMASSPRRDAGSIFSLFSTGYRICAGCNAEIGRGRFLSCMGGVWHPECFRCQACNLPITDYEFSMSNNRPYHKSCYKEQHHPKCDVCKNFIPTNSAGLIEYRAHPFWHQKYCPSHERDGTPRCCSCERMESKDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIGAGYRIMDMITEPYRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIYAGSGGDGASSSSSSSSSSPSSSSSTSSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNKAVLKYGLRRTLDHIHLTGSFPL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g2041 524 CDD LIM 181 256 - -
Acco12g2041 524 SMART uim 43 62 IPR003903 -
Acco12g2041 524 SMART uim 117 136 IPR003903 -
Acco12g2041 524 CDD LIM_DA1 154 206 - -
Acco12g2041 524 Gene3D Cysteine Rich Protein 145 211 - -
Acco12g2041 524 Pfam LIM domain 154 209 IPR001781 -
Acco12g2041 524 PANTHER PROTEIN DA1-RELATED 2 3 523 IPR045218 -
Acco12g2041 524 MobiDBLite consensus disorder prediction 444 466 - -
Acco12g2041 524 Coils Coil 100 120 - -
Acco12g2041 524 MobiDBLite consensus disorder prediction 444 470 - -
Acco12g2041 524 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Acco12g2041 524 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 147 179 - -
Acco12g2041 524 FunFam Protein DA1-related 1 148 207 - -
Acco12g2041 524 Pfam Protein DA1 303 518 IPR022087 -
Acco12g2041 524 ProSitePatterns LIM zinc-binding domain signature. 154 188 IPR001781 -
Acco12g2041 524 SMART lim_4 153 205 IPR001781 -
Acco12g2041 524 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 180 235 - -
Acco12g2041 524 ProSiteProfiles LIM domain profile. 152 212 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g2041 Acco-ChrAcco12 31993076 31997545 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco12g2041 DA1-like 2.2e-106 CL0126