Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g2039 ATGGGAATAGCAACACCGCCAGTGCTTCCGCCGATTCTTTCTCACTCCGGCAAGCCCCACCATTCATTTTCCTCCATAATAGACTCCAATTCTATGTCCCAAGATTATAACCAAGGAATCTTCACCTTCGAGAGACCCACAACTCTAACTCAGCAACAGCAACAGCAGCAGCACCAGTTAGCGCAGCAGATCCGGAGAGACAAGGTGAGGGTGCAAGGGGGGTTGGACCCGCCGCCGCCGCTTGTGGGTATTGAGGAACAAGAATCTGGAAACCTTCCCGTTTATGAAACCGGCGGGATGTTATCGGAGATGTTCAATTTCCCTCCTCCCGGCACCACCGCCACTGAATTGTTGGAACAACAACATCAACCGGCCGCGGCCATGTATCGGACTGCCAGGCCGCAACCTCTGGCCACGGATTGGTACAGACAAGGGATGTTAAGTGGGTTGGGAGATTCAAAGAATCAGAATAGCCGTGACAATACTAGTATACTAGAGCAACACCACCACCATCATCATCCTCAGATTTCAAGTATGAATGCGGACTCAGCCGCCGCCATGCAGCTTTTTCTTATGAACCCGCAAACAAGATCGCCTTCTCCGGCGACTCAAAACCACACTTCTAATTCAACTTCTCTGCAAGGCTTCAGTACACAAGGAGGGGGTTTTGGACCATTCACATGGGTCCCTCATAGCTCTCAGCCAGGAGCGGCGGGAGGTAATCCACCACCACAAATTGGAGGGGTTATGGAAGCTCAGGGGCTTTCGTTATCATTATCGTCGTCGCTGCAACATTTGGAAGCAGCGAAAGCCGAGGAATTGAGGATGGGAGAGAGTGGGTTTCTGTATTACAATCAAGGATCCGGAGAAGGAGGGTCTTCTTCGTCTGGTGGTGGTCAATATCCGTACAAGACATTGCATTTCCAAGGGTCGTCCGTAGTCGGGGCGGGTCAGAACCATGTGGGGTTTGGGTCGTCGTCATCATCATTAGGGGTGGTGAACGTGCTGAGGAATTCAAAGTACGTGAAAGCTGCACAAGAATTGCTTGAAGAATTCTGTAGTGTTGGGAGAGGACAGTTCAAGAGGAACAAGTTCACCAGACAACACTCAAACCCTAGTTCCAATCCTCCTCCTCCGGCTGCCACCGCCGCTACTGGTTCTTCTTCTTCATCTAAGGATCCTCCTCCTTTGTCATCGGCCGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCCATGCTGGACGAGGTGGATCGGAGATACAACCATTACTGCGAACAAATGCAAATGGTGGTGAACACATTTGACATGGTGATGGGATTCGGGTCAGCAGTGCCGTACACGGCCTTAGCTCAGAAGGCGATGTCACGGCATTTCCGGTGCCTGAAGGACGCGATAACGGCGCAGCTGAAGCACAGTTGCGAGCTGCTGGGAGAGAAGGACGGAGCAGGAAGCTCAGGGATAACCAAAGGAGAGACACCAAGGCTGAAGCTTCTAGAACAAAACCTGAGACAGCAGAGAGCCTTCCACCAGATGGGGATGATGGAACAAGAAGCATGGCGACCCCAAAGAGGCCTCCCTGAGAGATCCGTCAACATTTTGCGAGCTTGGCTCTTCGAGCATTTTCTTCATCCGTATCCAAGCGACGCTGATAAGCACCTGTTGGCTCGACAGACTGGCCTCTCCAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTGCGGCTGTGGAAACCTATGATAGAAGAAATGTACCAGCAAGAACTTAAGGAAGCTGAAGGAGAAGAGAGAGAAGAAAGGAACCAAAGCAACAACAGCAACCTCCTCGCACAAACTCCAATCACAGCAGCAACAAGTTCAGCAGAAGCAGCGCCACCACCATCCACAACAACAACGACACTCACAACAACACCAACAACGACACTCACAACAGCAGCAGCAGGCAAAAGATCCCAAATCAATGCTTCTGATAGCGACCCTTCACTCGTTGCAATCAATTATACCCAACCCTTCTCGGAATCCCAACCAAACCTCTCTTCCTCTGCCATCAACACCACTCCAGCCGCCGCACTTGCCGCCTCCTCTGAGGTGGCGCCACCATCGTCTCAGTGCTATGACTCTGCAGACCTGCTGATGCCCCCTCACAGATCAATGGCCACAGCAGATGACACATGTCGCCAAGGCAGCCTCATTGCAGCAGATTACGGGACCGCTTCTGGTAACTCTGACATTGGTTCTACTCTCATTAGGTTTGGGACCACCGCCGGTGATGTTTCTCTCACCCTAGGGCTTCGCCACGCCGGCAACATCCCTGAGAAAACTCCTCCTCCTTTCTCCCTAAGAGACTTCGGAGGCATTTAA 2370 0.5156 MGIATPPVLPPILSHSGKPHHSFSSIIDSNSMSQDYNQGIFTFERPTTLTQQQQQQQHQLAQQIRRDKVRVQGGLDPPPPLVGIEEQESGNLPVYETGGMLSEMFNFPPPGTTATELLEQQHQPAAAMYRTARPQPLATDWYRQGMLSGLGDSKNQNSRDNTSILEQHHHHHHPQISSMNADSAAAMQLFLMNPQTRSPSPATQNHTSNSTSLQGFSTQGGGFGPFTWVPHSSQPGAAGGNPPPQIGGVMEAQGLSLSLSSSLQHLEAAKAEELRMGESGFLYYNQGSGEGGSSSSGGGQYPYKTLHFQGSSVVGAGQNHVGFGSSSSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKRNKFTRQHSNPSSNPPPPAATAATGSSSSSKDPPPLSSADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNTFDMVMGFGSAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGAGSSGITKGETPRLKLLEQNLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMIEEMYQQELKEAEGEEREERNQSNNSNLLAQTPITAATSSAEAAPPPSTTTTTLTTTPTTTLTTAAAGKRSQINASDSDPSLVAINYTQPFSESQPNLSSSAINTTPAAALAASSEVAPPSSQCYDSADLLMPPHRSMATADDTCRQGSLIAADYGTASGNSDIGSTLIRFGTTAGDVSLTLGLRHAGNIPEKTPPPFSLRDFGGI 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g2039 789 SUPERFAMILY Homeodomain-like 524 589 IPR009057 -
Acco12g2039 789 FunFam BEL1-like homeodomain protein 4 525 587 - -
Acco12g2039 789 MobiDBLite consensus disorder prediction 195 217 - -
Acco12g2039 789 MobiDBLite consensus disorder prediction 592 611 - -
Acco12g2039 789 SMART HOX_1 522 586 IPR001356 GO:0003677
Acco12g2039 789 ProSiteProfiles 'Homeobox' domain profile. 519 582 IPR001356 GO:0003677
Acco12g2039 789 MobiDBLite consensus disorder prediction 1 29 - -
Acco12g2039 789 Pfam Homeobox KN domain 539 578 IPR008422 GO:0003677|GO:0006355
Acco12g2039 789 CDD homeodomain 522 583 IPR001356 GO:0003677
Acco12g2039 789 MobiDBLite consensus disorder prediction 380 396 - -
Acco12g2039 789 Pfam Associated with HOX 335 469 IPR006563 -
Acco12g2039 789 Coils Coil 585 605 - -
Acco12g2039 789 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 195 606 - -
Acco12g2039 789 MobiDBLite consensus disorder prediction 365 404 - -
Acco12g2039 789 Gene3D - 525 587 - -
Acco12g2039 789 SMART prehox3 330 470 IPR006563 -
Acco12g2039 789 MobiDBLite consensus disorder prediction 620 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g2039 Acco-ChrAcco12 31962674 31969090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g2039 29 569 Homeobox Transcription Factor Family AT4G36870 48.276 2.35e-138 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Acco12g2039 POX 4.8e-51 No_clan