Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g2024 ATGGTTTCAGAAGGTGTTGGTAATGCTGTTCGCTCAAAAACCAGTACAAACCAATTAATTTCCCACCAAGAGATGTCCTATTCCCGGAGGAACTTCGTTATTGTGCTCACAATCTTCATCGTCAACTCAACAAGAGCAGAAACCTCGAGCGACTGTCATCCCTGTTGTGGAAACGTTTCCGTGCCGTATCCTTTTGGATTCACTGAAAGTAGTCCAATAAAATTAAGTTGCCGCTACAAACGCTTGGAAATTGGGAGATTCCTGGTGAAGGAAGTAACCCCTAAAAGTATCTTGATCAATCTTCCTGCAAAATGTAACCGAAGTATGGAATCTATCCGATCCCTTTTCAGTAAAAATTTCGCTCCCACAAAGAACAATAGCTTTCTGGTGCAAAATTGTTCGTCTCAGCAGGGAAGCTGTTTTATACCCGTACCCACCGCCAGTCTGATGGGCAATCAATCCAATTTGGAGGATTGCCAAAGTAACATCAGTTGCTTTTTGCCAACAAAGAGTGATACAGATTTTCTAACATTAGCGGACTTAAATCAAACTACGTGCAAGTTCTTGTTCTCTGCAGTTGCTATTGAGCAAGGCAAAGACCCGACGATTTCGCTCCGTCCGCAGGTGCTCGAATTGGGGTGGTGGCTTGAAGGTCTATCCGGATGCTCTGACAAAGCAATCCCTATCACAGTCCATCTCGGCGGCGTGAAGACCGGGTATCGATGCCAATGTCATGAAGGTTACGTCGGAGATGGCTTCAAGAACGGCACTGATTGCCGGGACGTTTCTCAGTGCAGAGCCGCAACACTGTTGTCTGGTGGATGTGGAAAAGCAATTAAAATCGGCGTTCTTGTTGGCGGTATCGTTGTTATAGCTTTCATCCTGACTGGTGTGTGTCTACGATGTTACTTTGCTCGGCGCCGTTATACTTGTTTGAGAAAACAAATGACAGTAAAGCGTCGAGCACGTGAAGCTGCAGGCAACTCTATTCCTTTTTACCCGTACAAAGAAATAGAAAAGGCCACTAATTTTTTCTCTGAGGAGCAGAAGTTGGGAACTGGGGCGTTTGGTACGGTATATGCAGGAAGACTACACGATAATGAATGTGTTGCAATAAAAAAGATCAAGTACAGAGACACCGACAGTGTTGACCTAGTTATGAACGAGATCAAACTTCTTTCTTCTGTGAGTCACCCTAATTTGGTACGCCTCTTGGGCTGCTGTATAGAGGGTTGTGAGCAGATACTTGTTTATGAGTTTATGCCCAATGGAACACTATCCCAGCATTTACAAAGAGTGGGGAAAACTGGACTTCCATGGACAACACGACTCACCATTGCTGCTGAAACTGCTAATGCTATAGCATATCTTCATTCTGCCATTGATCCCCCAATTTATCATAGGGACATAAAATCCAGTAATATACTCTTAGATTACAACTTCAAATCGAAAGTAGCAGATTTTGGGCTTTCTAGGCTTGGAATGACAGAAATATCACATATCTCAACTACTCCACAAGGGACTCCAGGGTACGTCGACCCTGAATACCACCAAAACTTCCATCTTTCTGATAAAAGTGACGTCTATAGTTTTGGAGTGGTTTTGGTTGAGATAATAACTGCCCTGAAAGTGGTTGATTTTGCCCGACCTCACAGCGAGGTTAATTTGGCTGCACTTGCTGTGGATAGGATTGGAAGAGGTTCTGTAGATGAGATCGTAGATCCTTTTCTGGAGCTTAATAGGGATGCTTGGACACTCCACTCTGTTCACAAGGTGGCTGAACTGGCATTTAGATGCCTTGCTTATCATAGTGACATGAGGCCTACTATGTTGGAAGTAGCAGAGGAGCTAGAACAAATCAGACGCAGTGGATGGGCAACAATGGAAGAAACTTTATGCACTGCATCATCGGTTGGTTCCTCATGTTCATCGCCTCGCGTTGGAAGTGAGAAGTCGATGGATCGTATTATTACTCTTAAAAAAGCAGAACGAGGGAGCAAGAGATCCATGAGTCAACAGAGGATGCATCCTGTGGAAGAAATGAGGGATAGCTCTCCTGTATCAGTGCATGATCCTTGGTTAAGTGAACAAAGCTCACCCTCTGCAAACAGCCTGTTGGGAAATGTGGTTCAGTGA 2136 0.4438 MVSEGVGNAVRSKTSTNQLISHQEMSYSRRNFVIVLTIFIVNSTRAETSSDCHPCCGNVSVPYPFGFTESSPIKLSCRYKRLEIGRFLVKEVTPKSILINLPAKCNRSMESIRSLFSKNFAPTKNNSFLVQNCSSQQGSCFIPVPTASLMGNQSNLEDCQSNISCFLPTKSDTDFLTLADLNQTTCKFLFSAVAIEQGKDPTISLRPQVLELGWWLEGLSGCSDKAIPITVHLGGVKTGYRCQCHEGYVGDGFKNGTDCRDVSQCRAATLLSGGCGKAIKIGVLVGGIVVIAFILTGVCLRCYFARRRYTCLRKQMTVKRRAREAAGNSIPFYPYKEIEKATNFFSEEQKLGTGAFGTVYAGRLHDNECVAIKKIKYRDTDSVDLVMNEIKLLSSVSHPNLVRLLGCCIEGCEQILVYEFMPNGTLSQHLQRVGKTGLPWTTRLTIAAETANAIAYLHSAIDPPIYHRDIKSSNILLDYNFKSKVADFGLSRLGMTEISHISTTPQGTPGYVDPEYHQNFHLSDKSDVYSFGVVLVEIITALKVVDFARPHSEVNLAALAVDRIGRGSVDEIVDPFLELNRDAWTLHSVHKVAELAFRCLAYHSDMRPTMLEVAEELEQIRRSGWATMEETLCTASSVGSSCSSPRVGSEKSMDRIITLKKAERGSKRSMSQQRMHPVEEMRDSSPVSVHDPWLSEQSSPSANSLLGNVVQ 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g2024 711 FunFam Wall-associated receptor kinase-like 20 421 630 - -
Acco12g2024 711 Gene3D Transferase(Phosphotransferase) domain 1 421 637 - -
Acco12g2024 711 FunFam Wall-associated receptor kinase-like 14 313 420 - -
Acco12g2024 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Acco12g2024 711 MobiDBLite consensus disorder prediction 690 711 - -
Acco12g2024 711 ProSitePatterns Protein kinases ATP-binding region signature. 351 374 IPR017441 GO:0005524
Acco12g2024 711 SUPERFAMILY Protein kinase-like (PK-like) 328 618 IPR011009 -
Acco12g2024 711 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 38 697 IPR044652 GO:0004672
Acco12g2024 711 MobiDBLite consensus disorder prediction 660 686 - -
Acco12g2024 711 MobiDBLite consensus disorder prediction 660 711 - -
Acco12g2024 711 SMART serkin_6 345 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g2024 711 CDD STKc_IRAK 351 620 - -
Acco12g2024 711 ProSiteProfiles Protein kinase domain profile. 345 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g2024 711 Gene3D Phosphorylase Kinase; domain 1 308 420 - -
Acco12g2024 711 Pfam Protein tyrosine and serine/threonine kinase 348 617 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g2024 Acco-ChrAcco12 31789740 31794091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g2024 10 709 Receptor kinase-like Gene Family AT2G23450 52.144 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Acco12g2024 PK_Tyr_Ser-Thr 4.6e-45 CL0016