Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g2003 ATGTCATCGTCATCAAAAACACCATGTGCAGCGTGTAAGCTACAAAGGAGAAAATGCACCCCAGAATGCGTGTTCGCGCCATACTTCCCACCGGACATCCCGCAAAAGTTTCAGAACGTACACTTTGTGTTCGGTGCGAGCAATGTGTCAAAGATTTTGACAGATCTGGATGTGTCACAACGCGAAGAAGCGGTTAGGTCATTGGCTTACGAAGCGGAAGCTCGGATCAAAGACCCTGTCTACGGCTGTGTGGGCCTCATCGCTTTTCTGCAGCAGAAGTTGAGGTCTCTAACAAATGAAATCGACAAAGCTAACAAGGAGATTGCTATTTATGAAGGCACTCATGGTCTTCAGCCCTTCCTCGTTCCTGGTTTAGATGCTCATCAGGCTGGAACAGCCAGCAATATTGTTTATGGCCACTCCTCCGTTTACCCCTACAATAATAACATTACGCCACAAGCCGTGGCAGGGGCTGGGGCTGGGAATTTGGTTATGCATAATCCGCCTCAACAGCAGCCGCTAGTGTCAGGTGATATGGGGTTGAGGCAAGCACAAGAATTGTATGGGATTTATGATCAGCAATCACCTTTACCTCAGAAAGGCTTTATGAGTTATGGTGGTGGTGGATCAGTTTCTGGGAGCGGAGCTGCAGAGATGTCAGCTTCGCTAGCTCTGAACACATTTGACAACCCTTATCAATCGATACAAGACCAAGGAGGAGATCGTCATCAACAACAGCAGAATCAGCATCACCATAATCTTCAAGAGCAGAGGCTGCCGCTGCAGCAAATGCAGCGCCAGAATCAGCCTCTGCACCATCAACTTCAAGAGCATTTATCATCATCGCAGCAACCACAACAACAGCAACTTCAACCACAGCCTCAGCACCAAGAGCAATTTAAAGACGAAGAAGGTAGGAGCGTCGGCCCAACTTCTTCTTGA 942 0.482 MSSSSKTPCAACKLQRRKCTPECVFAPYFPPDIPQKFQNVHFVFGASNVSKILTDLDVSQREEAVRSLAYEAEARIKDPVYGCVGLIAFLQQKLRSLTNEIDKANKEIAIYEGTHGLQPFLVPGLDAHQAGTASNIVYGHSSVYPYNNNITPQAVAGAGAGNLVMHNPPQQQPLVSGDMGLRQAQELYGIYDQQSPLPQKGFMSYGGGGSVSGSGAAEMSASLALNTFDNPYQSIQDQGGDRHQQQQNQHHHNLQEQRLPLQQMQRQNQPLHHQLQEHLSSSQQPQQQQLQPQPQHQEQFKDEEGRSVGPTSS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g2003 313 MobiDBLite consensus disorder prediction 231 313 - -
Acco12g2003 313 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Acco12g2003 313 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Acco12g2003 313 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 287 - -
Acco12g2003 313 Coils Coil 87 114 - -
Acco12g2003 313 MobiDBLite consensus disorder prediction 250 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g2003 Acco-ChrAcco12 31605021 31605962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g2003 3 123 AS2 family AT5G66870 61.983 5.44e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco12g2003 LOB 9.8e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco12g2003 12 31605021 31605962 Acco11g2158 11 35517515 35518459 CCT
Acco12g2003 12 31605021 31605962 Acco12g2003 12 31605021 31605962 ECH