Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1993 ATGGGTCTCTGTATTTCAAAGCCCTCTGCGAATCTCACATCCGCGTCTCCCAAATCTGAAACTGAATCGCCCAGGAATAACCAGGTACCACCTAGAGGTGACTCTGTGCCTGTTAATGACTGTCCTCAACCTCATTCGAGCACTTTGAACGGAGAAAACCCTAGCAAGGAGAAGAAAGAGGAGGAGAATGGTAAAAGATCGCCTTTCTTCCCGTTCTACAGCCCAAGTCCGGCACACTATTTGTTCTCGAAGAAGTCTCCGGCGAGATCTCCGGCGAATGGGAGCTCGAACTCCACGCCGAGGAGGTTTTTCAAACGTCCGTTCCCACCTCCGTCGCCGGCTAAGCACATAAAAGCTGTCCTGGCTAGGCGGCATGGCTCGGTGAAGCCGAATGAGGCAACGATACCAGAAGGGAGCGAAGCAGAGGTGGTTACTGGTCTTGATAAGAGTTTTGGATTCTCAAAGCATTTCGGGAACAAGTATGAATTAGGAGATGAGGTTGGGAGAGGTCACTTTGGTTACACTTGTGCTGCCAAGTTTAAGAAGGGCGAGCTCAAGGGGCAACAGGTGGCTGTGAAAGTTATCCCGAAAGCAAAGATGACCACTGCCATTGCTATTGAGGATGTAAGAAGAGAAGTAAAAATATTGAGAGCTTTAACAGGACATAAGAATCTTGTGCAATTCTATGATGCATACGAAGACCATGATAATGTCTATATAGTAATGGAGTTGTGTGAAGGAGGGGAGCTGTTGGACAGAATACTATCAAGAGGTGGAAAATACTCAGAGGATGATGCAAAAGCTGTAATGATACAAATACTTAATGTTGTTGCATTCTGCCATTTCCAGGGTGTTGTGCACCGCGATCTTAAACCTGAGAATTTCTTGTTTACGTCAAAGGATGAAAACTCAGAGCTGAAGGCTATAGATTTTGGATTGTCAGATTTTGTAAAACCAGATGAAAGGCTTAATGATATTGTTGGCAGTGCATACTATGTAGCTCCTGAGGTTCTACATAGATCTTACAGCACAGAGGCTGATGTCTGGAGTATTGGTGTGATTGCATATATTCTTTTATGTGGAAGCCGTCCATTTTGGGCTCGGACTGAGTCTGGAATCTTTCGTACTGTATTGAAATCTGATCCAACTTTTGATGAACCTCCTTGGCCTTCTCTATCAGCTGAGGCAAAAGACTTTGTTAAACGGCTACTTATTAAGGATCCACGTAAAAGAATGACGGCTGCACAGGCATTAAGTCATCCCTGGATTAAAAATTACAAGGATGTAAAAGTACCTTTGGATATTCTAATATTCAAGCTCATGAAGGCATACATGCGTTCCTCATCTCTACGGAAAGCAGCTTTAAGGGCACTGTCTAAGACATTAACGGCAGATGAGCTATTTTATTTGAAGGAGCAGTTTACACTTTTAGAGCCCAACAAAAATGGTGCTATAAGCTTGGAAAGTATCAAAGCGGTCTTGGCGAAAAATGCTACAGATGCCATGAAAGAGTCACGCATTTCCGACTTTCTGGCATCACTCAATGCATTGCAGTATAGAAAGATGGATTTTGATGAGTTCTGTGCAGCTGCACTTAGTGTTCATCAACTTGAAGCACTTGGCCGGTGGGAGCAGCAGGCTCGCTATGCCTATGAGCTTTTTGAAAAAGATGGAAACCGCGCTATTGTCATTGAGGAACTAGCTTCGGAACTTAGCCTTGGCCCATCTGTCCCTGTTCATGCTGTCCTTCATGATTGGATTAGACATACTGATGGAAAGTTAAGCTTCCTTGGTTTTGTCAAATTGTTGCATGGACCATCTCGAAGTCTCGCTAAGGTTCAATAG 1845 0.4417 MGLCISKPSANLTSASPKSETESPRNNQVPPRGDSVPVNDCPQPHSSTLNGENPSKEKKEEENGKRSPFFPFYSPSPAHYLFSKKSPARSPANGSSNSTPRRFFKRPFPPPSPAKHIKAVLARRHGSVKPNEATIPEGSEAEVVTGLDKSFGFSKHFGNKYELGDEVGRGHFGYTCAAKFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLVQFYDAYEDHDNVYIVMELCEGGELLDRILSRGGKYSEDDAKAVMIQILNVVAFCHFQGVVHRDLKPENFLFTSKDENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRTVLKSDPTFDEPPWPSLSAEAKDFVKRLLIKDPRKRMTAAQALSHPWIKNYKDVKVPLDILIFKLMKAYMRSSSLRKAALRALSKTLTADELFYLKEQFTLLEPNKNGAISLESIKAVLAKNATDAMKESRISDFLASLNALQYRKMDFDEFCAAALSVHQLEALGRWEQQARYAYELFEKDGNRAIVIEELASELSLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKVQ 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1993 614 Gene3D Transferase(Phosphotransferase) domain 1 250 435 - -
Acco12g1993 614 FunFam CDPK-related kinase 3 153 325 - -
Acco12g1993 614 FunFam CDPK-related kinase 1 459 532 - -
Acco12g1993 614 MobiDBLite consensus disorder prediction 88 102 - -
Acco12g1993 614 ProSiteProfiles Protein kinase domain profile. 161 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g1993 614 Gene3D - 441 602 - -
Acco12g1993 614 MobiDBLite consensus disorder prediction 1 71 - -
Acco12g1993 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Acco12g1993 614 Pfam Protein kinase domain 161 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g1993 614 PANTHER SERINE/THREONINE-PROTEIN KINASE 140 589 - -
Acco12g1993 614 MobiDBLite consensus disorder prediction 83 112 - -
Acco12g1993 614 Gene3D Phosphorylase Kinase; domain 1 154 249 - -
Acco12g1993 614 CDD STKc_CAMK 160 422 - -
Acco12g1993 614 MobiDBLite consensus disorder prediction 7 33 - -
Acco12g1993 614 SUPERFAMILY EF-hand 451 605 IPR011992 -
Acco12g1993 614 FunFam CDPK-related kinase 1 154 249 - -
Acco12g1993 614 SMART serkin_6 161 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g1993 614 ProSitePatterns Protein kinases ATP-binding region signature. 167 193 IPR017441 GO:0005524
Acco12g1993 614 Gene3D - 463 532 - -
Acco12g1993 614 FunFam Calcium-dependent protein kinase SK5 333 428 - -
Acco12g1993 614 MobiDBLite consensus disorder prediction 52 66 - -
Acco12g1993 614 SUPERFAMILY Protein kinase-like (PK-like) 158 450 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1993 Acco-ChrAcco12 31516464 31521139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1993 1 614 EF-hand Containing Proteins AT3G50530 74.768 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Acco12g1993 Pkinase 2e-71 CL0016