Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1967 ATGACGCAGCGATCGGCGCCGGCACCGTTTCTGACGAAGACGTACCTTTTGGTCGACGATGAGCGCACCAACGACGTGATATCGTGGAGCGAAAGCGGCGAGACTTTCGTGGTGTGGAAGCAAGCGGATTTCGCCAAGGATTTGCTTCCTAATTATTTCAAACACAACAATTTCTCCAGCTTTGTTCGTCAGCTCAACACTTATGGATTCCGGAAGATAGTGCCGGACAAATGGGAATTCGCCAACGAATATTTCAAGCGAGGACGCAAGGAGCTGCTCTCCGAGATCAAACGTCGGAAGACTACTCTCGTGCAACCAGCCTCCGGGAAGTCCGGCAGTGGAGGAGGCGGCAACTCGTCAAACTCCGGAGGAGCCGGCGACGACGTGGGATCCACCTCCACTTCATCGGGTTCAACCGAGCCAAAGACGGTTGCTCCGGCTGCTCCGGAATATTTAGAGTTATCGGGAGAGAATGAGAAACTGAGGAAAGATAATGAAATGCTGAGCTCAGAGCTGGCGGAGGCGAAGAAGAAGTGTGAGGAGCTGGTGTTTTTTCTGAGGGAGTATCTCAAAGTGGGGCCTGATCTGATTAATCGAATAATGATGCGGCAAGGAACAAGTGGGTCCAGCCGCGAAGAAGAAGAAGAGGTGGAGGAAACAGCAAAGGCGGTAGGTGAAGGCGGAGAAAGTCTGAAACTATTTGGGTTTTGGTTGAGAGGTGAGAAAGAGACGATGAAGGAGGAGGAGAAAATAAGAAGCATCACCAACAACCACCACCACCACCGCCACAACAAGAGAGGGCGCGAAGACCAAATGGCCTTTAGCGGGCCCCGCCCATCAAAGGAGCTGAAGACAAGTGTGCATTTTGGAGCGTCGGCTCCTGTGAATATCATGATCAACTGA 903 0.5205 MTQRSAPAPFLTKTYLLVDDERTNDVISWSESGETFVVWKQADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGRKELLSEIKRRKTTLVQPASGKSGSGGGGNSSNSGGAGDDVGSTSTSSGSTEPKTVAPAAPEYLELSGENEKLRKDNEMLSSELAEAKKKCEELVFFLREYLKVGPDLINRIMMRQGTSGSSREEEEEVEETAKAVGEGGESLKLFGFWLRGEKETMKEEEKIRSITNNHHHHRHNKRGREDQMAFSGPRPSKELKTSVHFGASAPVNIMIN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1967 300 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 239 IPR027725 -
Acco12g1967 300 Gene3D - 146 190 - -
Acco12g1967 300 MobiDBLite consensus disorder prediction 104 142 - -
Acco12g1967 300 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco12g1967 300 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco12g1967 300 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco12g1967 300 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco12g1967 300 MobiDBLite consensus disorder prediction 256 284 - -
Acco12g1967 300 Coils Coil 151 178 - -
Acco12g1967 300 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco12g1967 300 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Acco12g1967 300 FunFam Heat stress transcription factor B-4 2 100 - -
Acco12g1967 300 Gene3D - 2 101 IPR036388 -
Acco12g1967 300 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco12g1967 300 MobiDBLite consensus disorder prediction 103 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1967 Acco-ChrAcco12 31147045 31149381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1967 3 250 HSF AT4G36990 55.118 4.53e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Acco12g1967 HSF_DNA-bind 3e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2140 11 35369068 35371579 Acco12g1967 12 31147045 31149381 CCT
Acco12g1967 12 31147045 31149381 Acco12g1967 12 31147045 31149381 ECH