Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1962 ATGGAGCAGCGTAAACTTGTGGTTTTGGGTATCCCATGGGATGTCGATACTGAGGGTTTGAAAGATTATATGATCAAATTTGGTGAATTGGAAGATTGTATTGTCATGAAGGAGCGGTCAACTGGCCGATCTCGTGGTTTTGGATATGTTACATTTGCATCAGTTGACGATGCTGAGAAAGCATTATCAAGCGAGCATGTTCTCGGCAATAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGAGCACCAGCAAAGAAAGTTACCAGAATTTTTGTTGCTAGAATTCCACCATCAGTAACAGAAGCAACTTTTAGAAGTCATTTTGAGAGATATGGTGAGATAACAGATTTATACATGCCAAAGGACCAGGGCTCGAAATCACACCGTGGAATTGGCTTTATAACTTTTGCTAATGCAGAATCTGTGGAGAATTTAATGGCAGACACTCATGAATTGGGAGGTTCTTCTGTGGTGGTTGATCGGGCAACACCAAAGGAAGATGATTTCAGGCCTATTGGCAGAATGCCGCAGGGAGGGTATGGTGCATACAATGCATATATATCTGCAACTCGATATGCTGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGATCAGTTTATGGAAGGGGAGAACCAGTTCGTGGAATGGGCAAAAAAATTTTTGTTGGCCGCCTTCCCCCTGAAGCGTCTGCTGATGATCTTCGCCAGTATTTTGGAAGATTTGGTCGTATACTAGACGTATATGTTCCAAAGGATCCCAAGAGAGCTGGCCATAGAGGATTTGGTTTTGTAACTTTTGCTGAAGATGGTGTAGCTGAACGTGTCTCTCGGAGGCCTCATGAAATTTGTGGACATCAGGTTGCTATAGATTCAGCCACACCTCTTGATGATGCTGGGCCCAGTTCAAGTTTTATGATGAACAGTGTGGATGCTTTTGGGGGATATGGCGGTCCTATGCGCACCTATGGTAGGATGTATGGGAGCCTGGACTTCGATGATTGGGGTTATGGAATTGGCAGCGCGAGACCATCGAGAGCAGATTGGAGGTATCGGCCATACTAG 1077 0.4513 MEQRKLVVLGIPWDVDTEGLKDYMIKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAEKALSSEHVLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEATFRSHFERYGEITDLYMPKDQGSKSHRGIGFITFANAESVENLMADTHELGGSSVVVDRATPKEDDFRPIGRMPQGGYGAYNAYISATRYAALGAPTLYDHPGSVYGRGEPVRGMGKKIFVGRLPPEASADDLRQYFGRFGRILDVYVPKDPKRAGHRGFGFVTFAEDGVAERVSRRPHEICGHQVAIDSATPLDDAGPSSSFMMNSVDAFGGYGGPMRTYGRMYGSLDFDDWGYGIGSARPSRADWRYRPY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1962 358 SMART rrm1_1 224 295 IPR000504 GO:0003723
Acco12g1962 358 SMART rrm1_1 5 76 IPR000504 GO:0003723
Acco12g1962 358 SMART rrm1_1 93 164 IPR000504 GO:0003723
Acco12g1962 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 299 IPR000504 GO:0003723
Acco12g1962 358 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Acco12g1962 358 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Acco12g1962 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Acco12g1962 358 Gene3D - 86 192 IPR012677 -
Acco12g1962 358 Gene3D - 1 85 IPR012677 -
Acco12g1962 358 SUPERFAMILY RNA-binding domain, RBD 223 322 IPR035979 GO:0003676
Acco12g1962 358 SUPERFAMILY RNA-binding domain, RBD 89 187 IPR035979 GO:0003676
Acco12g1962 358 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Acco12g1962 358 FunFam RNA-binding family protein isoform 1 220 303 - -
Acco12g1962 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 155 IPR000504 GO:0003723
Acco12g1962 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 65 IPR000504 GO:0003723
Acco12g1962 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 279 IPR000504 GO:0003723
Acco12g1962 358 Gene3D - 221 303 IPR012677 -
Acco12g1962 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Acco12g1962 358 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 222 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1962 Acco-ChrAcco12 31098225 31102275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1962 6 291 Eukaryotic Initiation Factors Gene Family AT4G34110 22.378 8.69e-09 55.1