Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1961 ATGGACGTGGATGACAGAAGCATGGACATGATGGCAATGATGATGCAAATGGAAAAGTTTCCTGAATTCTCTGAACCTTTTTACCCAGAACCTCCATTAATCTCCACCATCACCACCACCAACAACAACACTATGCCCATACTCTCCAATAACATGATCAATAATAATAATCCCTTCGTGACCAACAACACTATTACTCCAATCCCAGAATCGCACAACCTCATTCACCAACCCAACAATATTATTAACCGTAATGCTTCTTCTTCTTCTTCCATTGAGAAGAAGAATTCTATGGCGGCCATGAGAGAGATGATATTTCGAATAGCGGTGATGCAGCCTATTCACATAGACCCAGAAGCCATTAAGCCTCCAAAGAGAAGGAACGTGAAGATATCGAAGGATCCTCAAAGCGTGGCGGCGAGGCACCGGAGGGAGAGAATAAGCGAGAGAATTAGGATTTTGCAGAGATTAGTACCTGGAGGGACTAAAATGGACACGGCTTCGATGTTGGATGAAGCTATACATTATGTTAAGTTCTTGAAGAAGCAAGTTCAGACGCTGGAACAAGCTGGAGCTAGTAGAGCTACTGTGGGTTTTGGGGTACCTACTAGCTTCAATAATATGAATAATAGTAATTATTCCAATACTTTATTGAAGGATTATAATTACCATCAACCTTCTCATCAGATAGTGGCTGGTTCTGTGCAAATGCTAAGCTGA 720 0.4181 MDVDDRSMDMMAMMMQMEKFPEFSEPFYPEPPLISTITTTNNNTMPILSNNMINNNNPFVTNNTITPIPESHNLIHQPNNIINRNASSSSSIEKKNSMAAMREMIFRIAVMQPIHIDPEAIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRATVGFGVPTSFNNMNNSNYSNTLLKDYNYHQPSHQIVAGSVQMLS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1961 239 FunFam BHLH transcription factor 134 197 - -
Acco12g1961 239 Coils Coil 170 190 - -
Acco12g1961 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Acco12g1961 239 SMART finulus 137 186 IPR011598 GO:0046983
Acco12g1961 239 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 54 228 IPR045843 GO:0003700|GO:0006355
Acco12g1961 239 Pfam Helix-loop-helix DNA-binding domain 140 180 IPR011598 GO:0046983
Acco12g1961 239 Gene3D - 130 197 IPR036638 GO:0046983
Acco12g1961 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 190 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1961 Acco-ChrAcco12 31088031 31088750 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1961 17 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 60.753 2.18e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco12g1961 HLH 1.3e-06 No_clan